Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-146 |
| Cow position: | chr13:47861599-47861743 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-258 |
| Cow position: | chr13:16254610-16254355 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 193, 24 |
| Conread position: | 1-322 |
| Cow position: | chr13:1592381-1592059 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 54 |
| Conread position: | 1-351 |
| Cow position: | chr13:15450357-15449993 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 99 |
| Conread position: | 1-357 |
| Cow position: | chr13:34324785-34324429 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 251 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 48, 166 |
| Conread position: | 1-360 |
| Cow position: | chr13:14402324-14401958 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 53 |
| Conread position: | 1-380 |
| Cow position: | chr13:11797943-11797563 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 18 |
| Conread position: | 1-380 |
| Cow position: | chr13:17330990-17330621 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 1-382 |
| Cow position: | chr13:4484567-4484951 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 66 |
| Conread position: | 1-382 |
| Cow position: | chr13:15543314-15543700 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-382 |
| Cow position: | chr13:15923606-15923220 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 35 |
| Conread position: | 1-382 |
| Cow position: | chr13:30654607-30654235 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 50 |
| Conread position: | 1-382 |
| Cow position: | chr13:31611533-31611149 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 32 |
| Conread position: | 1-382 |
| Cow position: | chr13:34041563-34041175 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 53 |
| Conread position: | 1-382 |
| Cow position: | chr13:34938238-34938603 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 34 |
| Conread position: | 1-383 |
| Cow position: | chr13:9045542-9045930 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 33 |
| Conread position: | 1-384 |
| Cow position: | chr13:25692456-25692835 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 36 |
| Conread position: | 1-388 |
| Cow position: | chr13:3653546-3653148 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-389 |
| Cow position: | chr13:31730121-31729727 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 35 |
| Conread position: | 2-382 |
| Cow position: | chr13:32546165-32546551 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 35 |
| Conread position: | 2-383 |
| Cow position: | chr13:42202463-42202089 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 158, 52 |
| Conread position: | 3-255 |
| Cow position: | chr13:60467102-60467354 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | chr13:17309248-17309629 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 31 |
| Conread position: | 3-381 |
| Cow position: | chr13:21697027-21697422 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 274 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 193, 22 |
| Conread position: | 3-382 |
| Cow position: | chr13:31733114-31732734 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 31 |
| Conread position: | 3-382 |
| Cow position: | chr13:47229229-47228838 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 165 |
| Conread position: | 3-382 |
| Cow position: | chr13:50110226-50110612 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 34 |
| Conread position: | 6-382 |
| Cow position: | chr13:4942163-4942544 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 27 |
| Conread position: | 6-382 |
| Cow position: | chr13:6667355-6666974 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 6-382 |
| Cow position: | chr13:23002233-23001849 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 28 |
| Conread position: | 7-382 |
| Cow position: | chr13:13900648-13901027 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 27 |
| Conread position: | 9-212 |
| Cow position: | chr13:34153979-34153775 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 112, 24 |
| Conread position: | 9-220 |
| Cow position: | chr13:6758750-6758966 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 40, 162 |
| Conread position: | 9-233 |
| Cow position: | chr13:32737042-32736821 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 116, 45 |
| Conread position: | 9-267 |
| Cow position: | chr13:42218131-42217874 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 187, 27 |
| Conread position: | 9-325 |
| Cow position: | chr13:21602489-21602797 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 9-369 |
| Cow position: | chr13:43590113-43590471 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 41 |
| Conread position: | 9-371 |
| Cow position: | chr13:44653033-44652669 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 140, 42 |
| Conread position: | 9-377 |
| Cow position: | chr13:43982317-43981957 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 42 |
| Conread position: | 9-382 |
| Cow position: | chr13:15519725-15519366 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 45 |
| Conread position: | 9-382 |
| Cow position: | chr13:34049519-34049896 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 25, 159 |
| Conread position: | 9-382 |
| Cow position: | chr13:57024479-57024848 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 259 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 78, 46 |
| Conread position: | 9-383 |
| Cow position: | chr13:14178057-14177688 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 101, 26 |
| Conread position: | 10-324 |
| Cow position: | chr13:23405861-23405558 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 187, 44 |
| Conread position: | 11-389 |
| Cow position: | chr13:8797008-8796640 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 14-371 |
| Cow position: | chr13:21908314-21907957 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 17, 156 |
| Conread position: | 15-381 |
| Cow position: | chr13:678537-678909 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 21 |
| Conread position: | 18-381 |
| Cow position: | chr13:2388021-2387647 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 257 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 32, 149 |
| Conread position: | 20-382 |
| Cow position: | chr13:13325719-13326088 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 139 |
| Conread position: | 20-382 |
| Cow position: | chr13:35758072-35758445 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 147 |
| Conread position: | 22-389 |
| Cow position: | chr13:32984551-32984178 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 155 |
| Conread position: | 23-382 |
| Cow position: | chr13:5625195-5624834 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 144 |
| Conread position: | 26-360 |
| Cow position: | chr13:11794247-11793940 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 51, 81 |
| Conread position: | 30-382 |
| Cow position: | chr13:30304094-30304455 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 169, 66 |
| Conread position: | 39-377 |
| Cow position: | chr13:30239132-30239473 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 103 |
| Conread position: | 40-377 |
| Cow position: | chr13:21839391-21839039 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 144 |
| Conread position: | 41-349 |
| Cow position: | chr13:48358455-48358769 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 102 |
| Conread position: | 55-401 |
| Cow position: | chr13:29226332-29225994 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 81-363 |
| Cow position: | chr13:34030472-34030761 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 117, 94 |
| Conread position: | 91-381 |
| Cow position: | chr13:17998418-17998717 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 86 |
| Conread position: | 98-381 |
| Cow position: | chr13:49974532-49974824 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 98-382 |
| Cow position: | chr13:28860031-28860324 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 134-360 |
| Cow position: | chr13:19441371-19441595 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 94, 79 |
| Conread position: | 149-382 |
| Cow position: | chr13:31507834-31508069 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 50, 27 |
| Conread position: | 155-382 |
| Cow position: | chr13:34342831-34343065 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 44, 6 |
| Conread position: | 159-411 |
| Cow position: | chr13:26845215-26845484 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 162-359 |
| Cow position: | chr13:32924193-32924002 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 37, 81 |
| Conread position: | 171-382 |
| Cow position: | chr13:34909083-34908872 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 25, 123 |
| Conread position: | 183-382 |
| Cow position: | chr13:6358074-6358283 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 15, 196 |
| Conread position: | 224-381 |
| Cow position: | chr13:5500998-5500840 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 228-382 |
| Cow position: | chr13:16253511-16253357 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 60, 76 |
| Conread position: | 237-377 |
| Cow position: | chr13:60648792-60648648 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 136 |
| Conread position: | 243-384 |
| Cow position: | chr13:42090669-42090530 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 254-381 |
| Cow position: | chr13:42217652-42217524 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 34, 54 |
Show alignments to all cow chromosomes.