Cow genome map

Conread name: Ss1.1-Spl1-SPL01G040079.5

Conread position: 1-166
Cow position: chr16:51405644-51405485 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 1-226
Cow position: chr16:7464134-7464359 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 106, 54

Conread position: 1-242
Cow position: chr16:29089988-29089749 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 166
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 85, 24

Conread position: 1-294
Cow position: chr16:1860526-1860817 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 215
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 98, 35

Conread position: 1-345
Cow position: chr16:42736096-42735745 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 174

Conread position: 1-382
Cow position: chr16:406732-406347 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 35

Conread position: 1-382
Cow position: chr16:837620-838008 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 145

Conread position: 1-382
Cow position: chr16:1432498-1432879 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 22

Conread position: 1-382
Cow position: chr16:1567146-1566763 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 53

Conread position: 1-382
Cow position: chr16:2482832-2482443 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 141

Conread position: 1-382
Cow position: chr16:3330243-3330629 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 50

Conread position: 1-382
Cow position: chr16:8815799-8815411 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 50

Conread position: 1-382
Cow position: chr16:10438559-10438949 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 49

Conread position: 1-382
Cow position: chr16:14665503-14665119 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 125

Conread position: 1-382
Cow position: chr16:15185379-15185768 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 32

Conread position: 1-382
Cow position: chr16:18497981-18497627 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 125

Conread position: 1-382
Cow position: chr16:23252128-23251734 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 32

Conread position: 1-382
Cow position: chr16:23983604-23983990 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 47

Conread position: 1-382
Cow position: chr16:25342276-25342662 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 282
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 194, 34

Conread position: 1-382
Cow position: chr16:25441935-25442321 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 156

Conread position: 1-382
Cow position: chr16:29047324-29047715 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 168

Conread position: 1-382
Cow position: chr16:31591612-31591224 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 118

Conread position: 1-382
Cow position: chr16:43896969-43896570 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 33

Conread position: 1-383
Cow position: chr16:15477148-15477534 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 53

Conread position: 1-384
Cow position: chr16:56119979-56120358 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 265
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 108, 53

Conread position: 1-389
Cow position: chr16:2410659-2410269 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 268
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 60, 53

Conread position: 1-389
Cow position: chr16:7676150-7675752 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 32

Conread position: 1-389
Cow position: chr16:16270833-16270433 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 33

Conread position: 2-382
Cow position: chr16:25457154-25456787 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 48

Conread position: 3-372
Cow position: chr16:56916756-56916387 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 30

Conread position: 3-381
Cow position: chr16:3088893-3088511 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 51

Conread position: 3-381
Cow position: chr16:21185923-21186308 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 33

Conread position: 3-381
Cow position: chr16:25188957-25189341 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 33

Conread position: 3-381
Cow position: chr16:27593815-27594196 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 31

Conread position: 6-226
Cow position: chr16:19151310-19151086 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 17, 65

Conread position: 6-317
Cow position: chr16:337478-337798 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 229
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 93, 32

Conread position: 6-380
Cow position: chr16:26978451-26978811 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 263
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 229, 48

Conread position: 6-381
Cow position: chr16:49221571-49221209 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 115

Conread position: 6-382
Cow position: chr16:5485043-5485419 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 27

Conread position: 6-382
Cow position: chr16:15567566-15567950 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 28

Conread position: 6-382
Cow position: chr16:16897772-16898142 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 26

Conread position: 6-382
Cow position: chr16:26664062-26664446 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 169

Conread position: 6-382
Cow position: chr16:27714489-27714129 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 267
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 192, 51

Conread position: 6-382
Cow position: chr16:40295865-40295470 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 160

Conread position: 6-411
Cow position: chr16:41166333-41165918 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 27

Conread position: 9-359
Cow position: chr16:25738984-25739305 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 238
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 189, 44

Conread position: 9-370
Cow position: chr16:49234316-49233954 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 24

Conread position: 9-375
Cow position: chr16:17056658-17056291 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 255
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 11, 44

Conread position: 9-381
Cow position: chr16:25085927-25086308 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 84

Conread position: 9-381
Cow position: chr16:26105748-26105358 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 41

Conread position: 9-381
Cow position: chr16:42185178-42184808 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 241
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 174, 43

Conread position: 9-382
Cow position: chr16:23671011-23671396 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 28

Conread position: 9-389
Cow position: chr16:12668452-12668088 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 262
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 61, 28

Conread position: 9-433
Cow position: chr16:23801801-23801360 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 292
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 75, 27

Conread position: 10-274
Cow position: chr16:15493819-15494088 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 195
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 185, 44

Conread position: 10-411
Cow position: chr16:20202315-20202726 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 284
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 185, 44

Conread position: 11-382
Cow position: chr16:23535574-23535194 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 43

Conread position: 12-370
Cow position: chr16:49255906-49255548 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 42

Conread position: 12-411
Cow position: chr16:55049548-55049144 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 267
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 125, 10

Conread position: 14-381
Cow position: chr16:28170041-28169661 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 20

Conread position: 15-382
Cow position: chr16:10375279-10374906 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 21

Conread position: 18-384
Cow position: chr16:3828948-3828590 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 248
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 173, 98

Conread position: 20-381
Cow position: chr16:28196917-28196552 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 16

Conread position: 20-382
Cow position: chr16:4478647-4478281 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 146

Conread position: 24-387
Cow position: chr16:10797354-10797722 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 246
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 13

Conread position: 25-378
Cow position: chr16:11782068-11781704 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 230
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 92, 156

Conread position: 28-381
Cow position: chr16:41762172-41762522 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 235
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 57, 64

Conread position: 28-382
Cow position: chr16:23808666-23809013 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 121

Conread position: 29-342
Cow position: chr16:29034396-29034701 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 146

Conread position: 29-389
Cow position: chr16:9209292-9209654 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 249
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 19, 131

Conread position: 30-349
Cow position: chr16:25171681-25172004 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 225
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 165, 114

Conread position: 30-382
Cow position: chr16:37482085-37481734 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 234
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 78, 36

Conread position: 37-382
Cow position: chr16:51084491-51084845 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 253
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 86, 73

Conread position: 40-381
Cow position: chr16:11283935-11284285 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 126

Conread position: 44-382
Cow position: chr16:19638410-19638748 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 240
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 151, 14

Conread position: 55-382
Cow position: chr16:47474608-47474945 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 232
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 40, 250

Conread position: 62-377
Cow position: chr16:46628294-46628615 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 220
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 132, 66

Conread position: 79-384
Cow position: chr16:5662212-5662531 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 233
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 5, 56

Conread position: 83-382
Cow position: chr16:2238374-2238074 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 25, 169

Conread position: 97-382
Cow position: chr16:27732980-27732692 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 217
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 11, 17

Conread position: 98-382
Cow position: chr16:5890398-5890691 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 79

Conread position: 100-382
Cow position: chr16:34530706-34530990 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 214
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 53, 35

Conread position: 103-382
Cow position: chr16:25001892-25001604 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 215
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 92, 15

Conread position: 104-389
Cow position: chr16:54324928-54324639 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 71

Conread position: 106-351
Cow position: chr16:20331191-20331458 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 195
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 93, 23

Conread position: 120-381
Cow position: chr16:19779228-19778960 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 10, 50

Conread position: 125-369
Cow position: chr16:37455572-37455324 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 76, 31

Conread position: 153-382
Cow position: chr16:48334114-48333876 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 165
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 45, 22

Conread position: 157-321
Cow position: chr16:49168639-49168472 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 18

Conread position: 171-386
Cow position: chr16:3918538-3918763 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 167
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 27, 208

Conread position: 175-382
Cow position: chr16:28470597-28470380 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 24, 204

Conread position: 177-382
Cow position: chr16:25258304-25258512 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 169
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 17, 38

Conread position: 181-371
Cow position: chr16:33011-33212 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 17, 0

Conread position: 194-381
Cow position: chr16:19080464-19080659 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 48, 183

Conread position: 201-355
Cow position: chr16:40557442-40557272 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 215-377
Cow position: chr16:19150064-19149901 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 26, 13

Conread position: 219-382
Cow position: chr16:25933223-25933389 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 153

Conread position: 228-382
Cow position: chr16:9931282-9931426 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 228-389
Cow position: chr16:7464853-7465016 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 54, 39

Conread position: 237-382
Cow position: chr16:32937068-32937212 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 10, 27

Conread position: 251-381
Cow position: chr16:1960051-1959926 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 90, 0

Show alignments to all cow chromosomes.