Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-240 |
| Cow position: | chr17:1880976-1881217 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 118, 166 |
| Conread position: | 1-368 |
| Cow position: | chr17:15372104-15372477 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 54 |
| Conread position: | 1-371 |
| Cow position: | chr17:8202844-8203203 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 198, 35 |
| Conread position: | 1-377 |
| Cow position: | chr17:2580496-2580885 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 178 |
| Conread position: | 1-379 |
| Cow position: | chr17:15324708-15325096 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 35 |
| Conread position: | 1-381 |
| Cow position: | chr17:40805688-40806072 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-382 |
| Cow position: | chr17:6069433-6069814 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 35 |
| Conread position: | 1-382 |
| Cow position: | chr17:6260736-6261125 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 165 |
| Conread position: | 1-382 |
| Cow position: | chr17:14240377-14240769 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-382 |
| Cow position: | chr17:19267950-19267557 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 53 |
| Conread position: | 1-382 |
| Cow position: | chr17:20099598-20099208 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 91 |
| Conread position: | 1-382 |
| Cow position: | chr17:24029125-24028735 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 53 |
| Conread position: | 1-383 |
| Cow position: | chr17:4060975-4061370 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-386 |
| Cow position: | chr17:11086843-11086455 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 33 |
| Conread position: | 2-410 |
| Cow position: | chr17:2262985-2263403 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 3-369 |
| Cow position: | chr17:2149314-2149695 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 14 |
| Conread position: | 3-381 |
| Cow position: | chr17:6611608-6611223 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 3-381 |
| Cow position: | chr17:9080546-9080157 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 165 |
| Conread position: | 3-381 |
| Cow position: | chr17:11783719-11784121 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 3-381 |
| Cow position: | chr17:15436673-15437047 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | chr17:31767160-31766773 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 3-382 |
| Cow position: | chr17:2174692-2175061 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 239, 45 |
| Conread position: | 3-382 |
| Cow position: | chr17:6120593-6120974 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 163 |
| Conread position: | 3-382 |
| Cow position: | chr17:15851568-15851957 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 107, 51 |
| Conread position: | 3-382 |
| Cow position: | chr17:20390207-20389821 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 32 |
| Conread position: | 6-351 |
| Cow position: | chr17:16121660-16121329 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 72 |
| Conread position: | 6-381 |
| Cow position: | chr17:3655411-3655029 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 30 |
| Conread position: | 6-381 |
| Cow position: | chr17:34157003-34157385 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 27 |
| Conread position: | 6-382 |
| Cow position: | chr17:15142473-15142090 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 107 |
| Conread position: | 6-382 |
| Cow position: | chr17:20086874-20086501 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 108 |
| Conread position: | 8-377 |
| Cow position: | chr17:16856635-16856258 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 26 |
| Conread position: | 9-290 |
| Cow position: | chr17:22133087-22133370 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 45, 112 |
| Conread position: | 9-355 |
| Cow position: | chr17:4082903-4083262 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 261 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 116, 17 |
| Conread position: | 9-370 |
| Cow position: | chr17:19020457-19020829 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 256 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 115, 162 |
| Conread position: | 9-377 |
| Cow position: | chr17:21418467-21418826 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 127, 40 |
| Conread position: | 9-381 |
| Cow position: | chr17:2031015-2031380 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 185, 28 |
| Conread position: | 9-381 |
| Cow position: | chr17:14216142-14215763 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 16 |
| Conread position: | 9-381 |
| Cow position: | chr17:43989386-43989767 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 45 |
| Conread position: | 9-382 |
| Cow position: | chr17:1656963-1656589 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 103, 45 |
| Conread position: | 9-382 |
| Cow position: | chr17:2078113-2077729 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 25 |
| Conread position: | 9-382 |
| Cow position: | chr17:24783047-24783426 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 40 |
| Conread position: | 10-389 |
| Cow position: | chr17:22558857-22559240 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 41 |
| Conread position: | 11-359 |
| Cow position: | chr17:151009-150637 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 165 |
| Conread position: | 12-274 |
| Cow position: | chr17:1703805-1703546 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 37, 5 |
| Conread position: | 16-245 |
| Cow position: | chr17:14895065-14895294 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 33, 103 |
| Conread position: | 17-381 |
| Cow position: | chr17:1787046-1786698 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 256 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 190, 6 |
| Conread position: | 17-382 |
| Cow position: | chr17:20403324-20403689 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 20 |
| Conread position: | 18-382 |
| Cow position: | chr17:23323555-23323187 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 129 |
| Conread position: | 22-389 |
| Cow position: | chr17:5227524-5227894 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 25-382 |
| Cow position: | chr17:4941816-4941466 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 170, 85 |
| Conread position: | 27-363 |
| Cow position: | chr17:54544-54199 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 40 |
| Conread position: | 28-195 |
| Cow position: | chr17:20488843-20489011 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 91, 140 |
| Conread position: | 41-377 |
| Cow position: | chr17:20080957-20080617 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 109 |
| Conread position: | 43-389 |
| Cow position: | chr17:14040125-14039773 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 63-389 |
| Cow position: | chr17:251090-251408 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 122, 71 |
| Conread position: | 67-382 |
| Cow position: | chr17:182517-182840 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 110 |
| Conread position: | 90-382 |
| Cow position: | chr17:2247117-2246817 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 60 |
| Conread position: | 95-387 |
| Cow position: | chr17:42266386-42266673 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 100, 71 |
| Conread position: | 101-359 |
| Cow position: | chr17:13675314-13675044 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 101-388 |
| Cow position: | chr17:4675091-4675376 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 75 |
| Conread position: | 102-367 |
| Cow position: | chr17:33284857-33284590 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 73 |
| Conread position: | 103-366 |
| Cow position: | chr17:19609202-19608932 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 23 |
| Conread position: | 107-382 |
| Cow position: | chr17:27793797-27793513 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 91, 70 |
| Conread position: | 118-289 |
| Cow position: | chr17:12669431-12669254 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 80, 58 |
| Conread position: | 118-381 |
| Cow position: | chr17:39049206-39049478 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 80, 59 |
| Conread position: | 135-376 |
| Cow position: | chr17:14296260-14296013 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 135-382 |
| Cow position: | chr17:4168192-4168446 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 40 |
| Conread position: | 149-381 |
| Cow position: | chr17:21769985-21769743 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 224 |
| Conread position: | 166-356 |
| Cow position: | chr17:23038620-23038816 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 20 |
| Conread position: | 175-348 |
| Cow position: | chr17:4208448-4208617 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 42 |
| Conread position: | 177-373 |
| Cow position: | chr17:13705840-13706046 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 197-381 |
| Cow position: | chr17:14936901-14936707 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 38, 182 |
| Conread position: | 250-382 |
| Cow position: | chr17:3640769-3640640 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 255-382 |
| Cow position: | chr17:28027364-28027238 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 284-382 |
| Cow position: | chr17:1704037-1704134 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
Show alignments to all cow chromosomes.