Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-367 |
| Cow position: | chr18:16393014-16392625 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 117, 205 |
| Conread position: | 1-370 |
| Cow position: | chr18:23798737-23799111 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 53 |
| Conread position: | 1-382 |
| Cow position: | chr18:16175528-16175146 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 52 |
| Conread position: | 1-382 |
| Cow position: | chr18:27837222-27836841 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 53 |
| Conread position: | 1-382 |
| Cow position: | chr18:29046854-29046484 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 33 |
| Conread position: | 1-382 |
| Cow position: | chr18:37507049-37507433 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 45 |
| Conread position: | 1-382 |
| Cow position: | chr18:40479476-40479870 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 168 |
| Conread position: | 1-382 |
| Cow position: | chr18:52652000-52652385 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 32 |
| Conread position: | 2-382 |
| Cow position: | chr18:19353448-19353839 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 32 |
| Conread position: | 3-381 |
| Cow position: | chr18:51342775-51343159 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 31 |
| Conread position: | 3-381 |
| Cow position: | chr18:51661431-51661814 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 77, 33 |
| Conread position: | 3-382 |
| Cow position: | chr18:11274017-11273643 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 274 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 191, 84 |
| Conread position: | 3-382 |
| Cow position: | chr18:16079757-16080147 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 164 |
| Conread position: | 3-382 |
| Cow position: | chr18:47742592-47742978 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 51 |
| Conread position: | 3-382 |
| Cow position: | chr18:51461963-51461578 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 51 |
| Conread position: | 3-382 |
| Cow position: | chr18:54005082-54004700 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 6-370 |
| Cow position: | chr18:25352349-25352725 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 48 |
| Conread position: | 6-382 |
| Cow position: | chr18:28972791-28972412 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 48 |
| Conread position: | 9-366 |
| Cow position: | chr18:16869516-16869868 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 188, 13 |
| Conread position: | 9-382 |
| Cow position: | chr18:16089232-16089592 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 45 |
| Conread position: | 9-382 |
| Cow position: | chr18:29238000-29238368 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 26 |
| Conread position: | 9-391 |
| Cow position: | chr18:54023038-54022649 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 47 |
| Conread position: | 9-430 |
| Cow position: | chr18:36177945-36177512 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 108, 16 |
| Conread position: | 10-261 |
| Cow position: | chr18:33751360-33751606 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 184, 42 |
| Conread position: | 10-384 |
| Cow position: | chr18:15856336-15856692 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 125, 27 |
| Conread position: | 11-373 |
| Cow position: | chr18:19405472-19405110 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 185, 43 |
| Conread position: | 11-382 |
| Cow position: | chr18:14131491-14131868 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 43 |
| Conread position: | 11-415 |
| Cow position: | chr18:51274947-51274542 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 182, 38 |
| Conread position: | 12-373 |
| Cow position: | chr18:40345304-40344938 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 255 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 111, 66 |
| Conread position: | 13-360 |
| Cow position: | chr18:56013674-56014036 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 17-255 |
| Cow position: | chr18:26246607-26246844 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 179, 140 |
| Conread position: | 20-382 |
| Cow position: | chr18:27988306-27988659 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 256, 122 |
| Conread position: | 24-415 |
| Cow position: | chr18:42515306-42515716 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 269 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 26-382 |
| Cow position: | chr18:54271603-54271950 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 170, 74 |
| Conread position: | 37-411 |
| Cow position: | chr18:37663464-37663856 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 258 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 39-381 |
| Cow position: | chr18:29865485-29865138 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 34 |
| Conread position: | 39-382 |
| Cow position: | chr18:33270072-33270391 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 162, 105 |
| Conread position: | 40-382 |
| Cow position: | chr18:29407318-29406981 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 68, 74 |
| Conread position: | 45-371 |
| Cow position: | chr18:14417109-14417441 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 121 |
| Conread position: | 49-377 |
| Cow position: | chr18:42126721-42127052 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 173, 117 |
| Conread position: | 52-382 |
| Cow position: | chr18:51614511-51614178 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 143, 26 |
| Conread position: | 58-363 |
| Cow position: | chr18:15821687-15821379 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 50, 55 |
| Conread position: | 63-360 |
| Cow position: | chr18:29074136-29074433 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 136, 35 |
| Conread position: | 68-419 |
| Cow position: | chr18:15529636-15529274 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 62 |
| Conread position: | 78-442 |
| Cow position: | chr18:32768912-32769295 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 43, 98 |
| Conread position: | 85-370 |
| Cow position: | chr18:54170340-54170045 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 100-382 |
| Cow position: | chr18:46884449-46884176 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 204, 75 |
| Conread position: | 101-384 |
| Cow position: | chr18:33300499-33300771 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 164, 74 |
| Conread position: | 102-366 |
| Cow position: | chr18:36255738-36255471 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 96, 73 |
| Conread position: | 109-382 |
| Cow position: | chr18:34043805-34044075 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 16 |
| Conread position: | 113-382 |
| Cow position: | chr18:16276765-16276489 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 35 |
| Conread position: | 113-382 |
| Cow position: | chr18:51482067-51482331 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 85, 62 |
| Conread position: | 114-382 |
| Cow position: | chr18:38343093-38342820 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 84, 35 |
| Conread position: | 171-377 |
| Cow position: | chr18:46876077-46875865 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 156 |
| Conread position: | 193-382 |
| Cow position: | chr18:25921251-25921454 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 44, 190 |
| Conread position: | 197-382 |
| Cow position: | chr18:36509896-36510089 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 45, 180 |
| Conread position: | 207-382 |
| Cow position: | chr18:51694992-51695174 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 35, 111 |
| Conread position: | 223-381 |
| Cow position: | chr18:26245305-26245151 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 250-371 |
| Cow position: | chr18:35054481-35054602 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.