Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-155 |
| Cow position: | chr19:33942699-33942854 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-233 |
| Cow position: | chr19:2273293-2273059 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 106, 53 |
| Conread position: | 1-318 |
| Cow position: | chr19:3139022-3139344 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 230 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 124, 35 |
| Conread position: | 1-365 |
| Cow position: | chr19:28405615-28405238 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 70 |
| Conread position: | 1-380 |
| Cow position: | chr19:40851358-40850984 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 53 |
| Conread position: | 1-382 |
| Cow position: | chr19:5729962-5730338 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-382 |
| Cow position: | chr19:7489437-7489835 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 178 |
| Conread position: | 1-382 |
| Cow position: | chr19:11522073-11521698 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 342, 53 |
| Conread position: | 1-382 |
| Cow position: | chr19:39184446-39184064 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 35 |
| Conread position: | 1-382 |
| Cow position: | chr19:40816426-40816032 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 173 |
| Conread position: | 1-382 |
| Cow position: | chr19:40886634-40886257 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 146 |
| Conread position: | 1-382 |
| Cow position: | chr19:50723644-50724029 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 33 |
| Conread position: | 1-388 |
| Cow position: | chr19:39391601-39392002 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-389 |
| Cow position: | chr19:892532-892151 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 33 |
| Conread position: | 1-436 |
| Cow position: | chr19:28367107-28367514 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 101, 35 |
| Conread position: | 3-245 |
| Cow position: | chr19:24294203-24294445 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 3-369 |
| Cow position: | chr19:20105819-20106194 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | chr19:773692-774080 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 162 |
| Conread position: | 3-381 |
| Cow position: | chr19:52150593-52150206 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 3-382 |
| Cow position: | chr19:7343161-7343547 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-382 |
| Cow position: | chr19:28594645-28595013 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 33 |
| Conread position: | 3-382 |
| Cow position: | chr19:33527205-33527591 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 6-380 |
| Cow position: | chr19:39395-39774 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 30 |
| Conread position: | 6-383 |
| Cow position: | chr19:30756314-30756696 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 17 |
| Conread position: | 9-339 |
| Cow position: | chr19:1656530-1656854 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 185, 16 |
| Conread position: | 9-340 |
| Cow position: | chr19:7070406-7070724 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 101, 14 |
| Conread position: | 9-360 |
| Cow position: | chr19:32204392-32204734 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 76, 141 |
| Conread position: | 9-362 |
| Cow position: | chr19:25924427-25924786 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 73, 25 |
| Conread position: | 9-370 |
| Cow position: | chr19:12774215-12774570 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 27 |
| Conread position: | 9-381 |
| Cow position: | chr19:438338-437956 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 268 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 190, 45 |
| Conread position: | 11-376 |
| Cow position: | chr19:48861102-48860738 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 191, 14 |
| Conread position: | 11-382 |
| Cow position: | chr19:35384511-35384139 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 250 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 185, 14 |
| Conread position: | 11-382 |
| Cow position: | chr19:38061537-38061912 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 97, 43 |
| Conread position: | 12-233 |
| Cow position: | chr19:264491-264721 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 161 |
| Conread position: | 12-382 |
| Cow position: | chr19:173356-173735 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 118 |
| Conread position: | 14-354 |
| Cow position: | chr19:33874531-33874874 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 19 |
| Conread position: | 14-382 |
| Cow position: | chr19:28580558-28580195 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 40 |
| Conread position: | 20-280 |
| Cow position: | chr19:167450-167183 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 175, 146 |
| Conread position: | 20-382 |
| Cow position: | chr19:5249635-5249255 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 5, 37 |
| Conread position: | 20-384 |
| Cow position: | chr19:256370-256744 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 147 |
| Conread position: | 21-382 |
| Cow position: | chr19:5900401-5900032 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 138 |
| Conread position: | 23-382 |
| Cow position: | chr19:342350-342704 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 47, 65 |
| Conread position: | 23-411 |
| Cow position: | chr19:6713609-6713199 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 95 |
| Conread position: | 24-183 |
| Cow position: | chr19:23376928-23377085 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 133, 12 |
| Conread position: | 26-443 |
| Cow position: | chr19:42583523-42583096 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 173, 152 |
| Conread position: | 34-382 |
| Cow position: | chr19:4386736-4387089 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 141 |
| Conread position: | 37-373 |
| Cow position: | chr19:1489873-1489527 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 244 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 162, 36 |
| Conread position: | 39-231 |
| Cow position: | chr19:75133-74941 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 156, 24 |
| Conread position: | 39-377 |
| Cow position: | chr19:135665-135317 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 247 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 34, 72 |
| Conread position: | 40-378 |
| Cow position: | chr19:1588102-1587768 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 30 |
| Conread position: | 40-381 |
| Cow position: | chr19:43144841-43145192 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 137 |
| Conread position: | 55-382 |
| Cow position: | chr19:39667387-39667061 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 114 |
| Conread position: | 63-382 |
| Cow position: | chr19:52842710-52843023 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 140, 50 |
| Conread position: | 64-389 |
| Cow position: | chr19:161982-161650 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 25, 114 |
| Conread position: | 66-349 |
| Cow position: | chr19:3173968-3174262 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 25, 110 |
| Conread position: | 79-382 |
| Cow position: | chr19:33653558-33653252 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 117, 34 |
| Conread position: | 84-381 |
| Cow position: | chr19:9706986-9706694 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 115, 28 |
| Conread position: | 98-381 |
| Cow position: | chr19:32210889-32210599 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 98, 68 |
| Conread position: | 134-326 |
| Cow position: | chr19:21339499-21339293 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 65, 41 |
| Conread position: | 140-382 |
| Cow position: | chr19:44031608-44031854 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 54, 36 |
| Conread position: | 180-384 |
| Cow position: | chr19:205771-205986 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 19, 200 |
| Conread position: | 200-382 |
| Cow position: | chr19:33942859-33943048 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 42, 176 |
| Conread position: | 224-381 |
| Cow position: | chr19:16319311-16319153 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 64, 26 |
Show alignments to all cow chromosomes.