Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-363 |
| Cow position: | chr20:35125545-35125916 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 53 |
| Conread position: | 1-380 |
| Cow position: | chr20:18314298-18313924 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 119 |
| Conread position: | 1-380 |
| Cow position: | chr20:37581265-37581639 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 53 |
| Conread position: | 1-381 |
| Cow position: | chr20:21394979-21395355 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 118 |
| Conread position: | 1-382 |
| Cow position: | chr20:13663994-13663609 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 20, 76 |
| Conread position: | 1-382 |
| Cow position: | chr20:19355819-19356206 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 52 |
| Conread position: | 1-382 |
| Cow position: | chr20:23799935-23800325 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 54 |
| Conread position: | 1-382 |
| Cow position: | chr20:25849770-25849383 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-382 |
| Cow position: | chr20:27338260-27338639 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 1-382 |
| Cow position: | chr20:27870255-27870646 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 33 |
| Conread position: | 1-382 |
| Cow position: | chr20:30686621-30687014 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 166 |
| Conread position: | 1-384 |
| Cow position: | chr20:15096829-15096453 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 280 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 198, 33 |
| Conread position: | 1-389 |
| Cow position: | chr20:23468611-23468217 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 53 |
| Conread position: | 1-437 |
| Cow position: | chr20:12569572-12570029 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 315 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 2-371 |
| Cow position: | chr20:32349317-32349702 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 19, 53 |
| Conread position: | 3-285 |
| Cow position: | chr20:8973764-8973479 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 3-382 |
| Cow position: | chr20:19438969-19439354 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 33 |
| Conread position: | 6-359 |
| Cow position: | chr20:9344024-9344386 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 48 |
| Conread position: | 6-377 |
| Cow position: | chr20:8216570-8216946 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 28 |
| Conread position: | 6-382 |
| Cow position: | chr20:5535989-5536382 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 171 |
| Conread position: | 6-382 |
| Cow position: | chr20:16178711-16178325 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 48 |
| Conread position: | 9-336 |
| Cow position: | chr20:10839660-10839341 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 181, 16 |
| Conread position: | 9-382 |
| Cow position: | chr20:8366865-8366499 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 20, 13 |
| Conread position: | 9-382 |
| Cow position: | chr20:13763964-13764335 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 45 |
| Conread position: | 9-382 |
| Cow position: | chr20:14869896-14869524 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 39 |
| Conread position: | 9-382 |
| Cow position: | chr20:15066539-15066904 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 271 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 190, 27 |
| Conread position: | 9-383 |
| Cow position: | chr20:5229451-5229079 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 192, 45 |
| Conread position: | 9-389 |
| Cow position: | chr20:13678993-13678600 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 45 |
| Conread position: | 10-382 |
| Cow position: | chr20:13499171-13499552 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 11-382 |
| Cow position: | chr20:15293063-15293426 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 184, 43 |
| Conread position: | 11-382 |
| Cow position: | chr20:21915691-21916075 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 40 |
| Conread position: | 12-384 |
| Cow position: | chr20:22210114-22210475 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 191, 38 |
| Conread position: | 17-382 |
| Cow position: | chr20:9521068-9520698 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 133 |
| Conread position: | 17-382 |
| Cow position: | chr20:18323865-18323517 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 50, 84 |
| Conread position: | 20-381 |
| Cow position: | chr20:823840-824208 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 146 |
| Conread position: | 20-383 |
| Cow position: | chr20:28564511-28564154 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 71 |
| Conread position: | 38-351 |
| Cow position: | chr20:5466127-5466440 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 159, 106 |
| Conread position: | 40-382 |
| Cow position: | chr20:871898-871569 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 241, 69 |
| Conread position: | 58-363 |
| Cow position: | chr20:35105897-35106202 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 61, 80 |
| Conread position: | 67-370 |
| Cow position: | chr20:13787174-13787471 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 128, 102 |
| Conread position: | 79-367 |
| Cow position: | chr20:5791465-5791755 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 5, 97 |
| Conread position: | 79-377 |
| Cow position: | chr20:30429398-30429704 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 70 |
| Conread position: | 79-389 |
| Cow position: | chr20:17660618-17660296 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 99 |
| Conread position: | 98-303 |
| Cow position: | chr20:40259446-40259661 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 68 |
| Conread position: | 140-363 |
| Cow position: | chr20:9546856-9547085 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 162-382 |
| Cow position: | chr20:32120544-32120771 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 37, 108 |
| Conread position: | 175-363 |
| Cow position: | chr20:19340862-19341057 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 186-382 |
| Cow position: | chr20:24615658-24615454 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 224-382 |
| Cow position: | chr20:12437141-12436983 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 8 |
| Conread position: | 243-393 |
| Cow position: | chr20:26054402-26054250 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 47, 139 |
Show alignments to all cow chromosomes.