Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-245 |
| Cow position: | chr21:2673841-2673595 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 50 |
| Conread position: | 1-259 |
| Cow position: | chr21:26836056-26836318 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 1-271 |
| Cow position: | chr21:2882572-2882305 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 48, 33 |
| Conread position: | 1-325 |
| Cow position: | chr21:26402322-26401997 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 124, 49 |
| Conread position: | 1-349 |
| Cow position: | chr21:18817386-18817025 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 163 |
| Conread position: | 1-372 |
| Cow position: | chr21:45786265-45785891 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 198, 53 |
| Conread position: | 1-381 |
| Cow position: | chr21:5840098-5839712 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 32 |
| Conread position: | 1-382 |
| Cow position: | chr21:3779933-3780324 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 1-382 |
| Cow position: | chr21:27069802-27069410 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 116 |
| Conread position: | 1-382 |
| Cow position: | chr21:31515161-31514764 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 172 |
| Conread position: | 1-382 |
| Cow position: | chr21:45782647-45783026 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 34 |
| Conread position: | 1-382 |
| Cow position: | chr21:47942113-47942499 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 35 |
| Conread position: | 1-389 |
| Cow position: | chr21:147095-147481 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 33 |
| Conread position: | 2-366 |
| Cow position: | chr21:30244-30600 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 52 |
| Conread position: | 2-381 |
| Cow position: | chr21:34823047-34822661 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 53 |
| Conread position: | 3-290 |
| Cow position: | chr21:28256596-28256883 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 30, 54 |
| Conread position: | 3-364 |
| Cow position: | chr21:11452378-11452017 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 3-371 |
| Cow position: | chr21:11506772-11507154 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 177 |
| Conread position: | 3-381 |
| Cow position: | chr21:27036233-27035848 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 3-381 |
| Cow position: | chr21:40683278-40682894 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 51 |
| Conread position: | 3-382 |
| Cow position: | chr21:2512010-2512399 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 78 |
| Conread position: | 3-382 |
| Cow position: | chr21:37372405-37372785 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 51 |
| Conread position: | 3-382 |
| Cow position: | chr21:39426227-39426622 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 48 |
| Conread position: | 3-382 |
| Cow position: | chr21:42914533-42914915 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 103 |
| Conread position: | 6-294 |
| Cow position: | chr21:9893065-9893350 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 189, 19 |
| Conread position: | 6-365 |
| Cow position: | chr21:27566916-27567290 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 28 |
| Conread position: | 6-369 |
| Cow position: | chr21:360814-361203 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 275 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 30, 206 |
| Conread position: | 6-370 |
| Cow position: | chr21:26849851-26849479 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 171 |
| Conread position: | 6-382 |
| Cow position: | chr21:30598309-30597928 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 44 |
| Conread position: | 6-382 |
| Cow position: | chr21:40270504-40270121 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 28 |
| Conread position: | 9-209 |
| Cow position: | chr21:30562657-30562849 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 186, 28 |
| Conread position: | 9-351 |
| Cow position: | chr21:37149209-37149543 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 9-367 |
| Cow position: | chr21:218202-218557 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 251 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 194, 45 |
| Conread position: | 9-368 |
| Cow position: | chr21:23708419-23708780 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 33, 109 |
| Conread position: | 9-370 |
| Cow position: | chr21:10851253-10851616 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 160 |
| Conread position: | 9-381 |
| Cow position: | chr21:39088174-39088538 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 238, 44 |
| Conread position: | 9-382 |
| Cow position: | chr21:1287031-1286663 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 109 |
| Conread position: | 9-382 |
| Cow position: | chr21:2417385-2417763 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 143 |
| Conread position: | 9-382 |
| Cow position: | chr21:27284637-27285019 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 167 |
| Conread position: | 9-382 |
| Cow position: | chr21:47646504-47646885 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 45 |
| Conread position: | 9-393 |
| Cow position: | chr21:21519784-21520165 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 186, 40 |
| Conread position: | 10-382 |
| Cow position: | chr21:1075240-1075618 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 125 |
| Conread position: | 10-382 |
| Cow position: | chr21:4716191-4716570 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 127, 44 |
| Conread position: | 10-382 |
| Cow position: | chr21:33253355-33253733 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 44 |
| Conread position: | 13-347 |
| Cow position: | chr21:21915863-21916207 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 6 |
| Conread position: | 18-369 |
| Cow position: | chr21:35144938-35145291 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 148 |
| Conread position: | 18-381 |
| Cow position: | chr21:28736361-28736719 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 18-382 |
| Cow position: | chr21:2712123-2712468 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 23-411 |
| Cow position: | chr21:4588803-4588391 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 146 |
| Conread position: | 26-381 |
| Cow position: | chr21:26635970-26635608 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 34-382 |
| Cow position: | chr21:28985309-28985650 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 165, 61 |
| Conread position: | 38-381 |
| Cow position: | chr21:468056-468411 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 249 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 157, 86 |
| Conread position: | 39-259 |
| Cow position: | chr21:4077985-4078198 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 160, 73 |
| Conread position: | 42-382 |
| Cow position: | chr21:28613553-28613878 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 16 |
| Conread position: | 44-381 |
| Cow position: | chr21:44529535-44529873 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 55-367 |
| Cow position: | chr21:5012487-5012168 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 144, 17 |
| Conread position: | 79-361 |
| Cow position: | chr21:28998877-28999168 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 99 |
| Conread position: | 79-381 |
| Cow position: | chr21:3169636-3169933 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 35 |
| Conread position: | 79-382 |
| Cow position: | chr21:4185167-4185469 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 97-382 |
| Cow position: | chr21:10567961-10568254 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 78 |
| Conread position: | 98-377 |
| Cow position: | chr21:29004254-29003983 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 195, 26 |
| Conread position: | 98-381 |
| Cow position: | chr21:7063761-7064053 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 98-381 |
| Cow position: | chr21:12054759-12054468 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 98, 227 |
| Conread position: | 105-338 |
| Cow position: | chr21:29625455-29625212 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 114-382 |
| Cow position: | chr21:5018419-5018690 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 84, 34 |
| Conread position: | 134-377 |
| Cow position: | chr21:20743316-20743078 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 197-381 |
| Cow position: | chr21:19612116-19612307 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 79 |
| Conread position: | 250-389 |
| Cow position: | chr21:2673549-2673411 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 251-382 |
| Cow position: | chr21:2880402-2880271 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 251-382 |
| Cow position: | chr21:26836603-26836735 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 119 |
| Conread position: | 257-382 |
| Cow position: | chr21:13298025-13298148 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 24 |
Show alignments to all cow chromosomes.