Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-239 |
| Cow position: | chr22:11032740-11032979 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 194, 35 |
| Conread position: | 1-371 |
| Cow position: | chr22:36860542-36860169 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 36 |
| Conread position: | 1-381 |
| Cow position: | chr22:44492045-44492433 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 11 |
| Conread position: | 1-382 |
| Cow position: | chr22:559716-559326 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 165 |
| Conread position: | 1-382 |
| Cow position: | chr22:6332703-6333092 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 53 |
| Conread position: | 1-382 |
| Cow position: | chr22:13773523-13773899 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 112 |
| Conread position: | 1-382 |
| Cow position: | chr22:17327462-17327079 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 32 |
| Conread position: | 1-382 |
| Cow position: | chr22:34169332-34169719 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 53 |
| Conread position: | 1-382 |
| Cow position: | chr22:36184752-36185136 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 94 |
| Conread position: | 1-382 |
| Cow position: | chr22:39468527-39468135 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 165 |
| Conread position: | 1-382 |
| Cow position: | chr22:44934963-44935347 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-383 |
| Cow position: | chr22:40370444-40370816 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 59 |
| Conread position: | 1-384 |
| Cow position: | chr22:522401-522012 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 53 |
| Conread position: | 1-386 |
| Cow position: | chr22:1520030-1519637 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 175 |
| Conread position: | 1-389 |
| Cow position: | chr22:37292672-37292288 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 33 |
| Conread position: | 3-259 |
| Cow position: | chr22:37140893-37141151 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 121, 49 |
| Conread position: | 3-345 |
| Cow position: | chr22:19320009-19320359 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 243 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-369 |
| Cow position: | chr22:27308780-27308408 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 22 |
| Conread position: | 3-371 |
| Cow position: | chr22:316499-316875 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 67 |
| Conread position: | 3-371 |
| Cow position: | chr22:1879795-1880173 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 177 |
| Conread position: | 3-380 |
| Cow position: | chr22:37268156-37268544 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 33 |
| Conread position: | 3-381 |
| Cow position: | chr22:3277364-3276979 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 3-381 |
| Cow position: | chr22:11804059-11803673 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 48 |
| Conread position: | 3-381 |
| Cow position: | chr22:19536549-19536931 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 31 |
| Conread position: | 3-381 |
| Cow position: | chr22:20239846-20239461 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 3-382 |
| Cow position: | chr22:538096-538490 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 91 |
| Conread position: | 3-382 |
| Cow position: | chr22:3803183-3803559 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 32 |
| Conread position: | 3-382 |
| Cow position: | chr22:6021658-6022043 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 31 |
| Conread position: | 3-382 |
| Cow position: | chr22:10908841-10908457 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 115 |
| Conread position: | 3-382 |
| Cow position: | chr22:16201923-16202292 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 31 |
| Conread position: | 3-382 |
| Cow position: | chr22:18028277-18028667 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 104 |
| Conread position: | 3-382 |
| Cow position: | chr22:46580726-46580339 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 3-411 |
| Cow position: | chr22:30677688-30677273 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 6-382 |
| Cow position: | chr22:12730685-12730317 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 14 |
| Conread position: | 6-382 |
| Cow position: | chr22:19142694-19142301 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 136 |
| Conread position: | 6-383 |
| Cow position: | chr22:1281733-1281354 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 172 |
| Conread position: | 6-384 |
| Cow position: | chr22:326179-325808 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 30 |
| Conread position: | 9-239 |
| Cow position: | chr22:44477626-44477851 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 190, 24 |
| Conread position: | 9-349 |
| Cow position: | chr22:8121082-8120734 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 169 |
| Conread position: | 9-354 |
| Cow position: | chr22:8737328-8736988 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 9-372 |
| Cow position: | chr22:1323208-1323577 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 16 |
| Conread position: | 9-378 |
| Cow position: | chr22:5937152-5936788 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 139, 25 |
| Conread position: | 9-382 |
| Cow position: | chr22:96342-95985 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 186, 45 |
| Conread position: | 9-382 |
| Cow position: | chr22:290701-290318 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 185, 25 |
| Conread position: | 9-382 |
| Cow position: | chr22:6502139-6501762 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 154 |
| Conread position: | 9-382 |
| Cow position: | chr22:13673809-13673427 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 44, 109 |
| Conread position: | 9-382 |
| Cow position: | chr22:24536761-24537138 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 136, 43 |
| Conread position: | 9-382 |
| Cow position: | chr22:42992177-42992555 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 26 |
| Conread position: | 11-370 |
| Cow position: | chr22:13547768-13547402 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 184, 26 |
| Conread position: | 11-389 |
| Cow position: | chr22:45581929-45582301 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 40 |
| Conread position: | 12-254 |
| Cow position: | chr22:37133661-37133901 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 5, 15 |
| Conread position: | 12-389 |
| Cow position: | chr22:18815363-18814979 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 154 |
| Conread position: | 16-381 |
| Cow position: | chr22:694630-694994 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 20 |
| Conread position: | 17-389 |
| Cow position: | chr22:44606667-44606296 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 77, 37 |
| Conread position: | 18-382 |
| Cow position: | chr22:34600363-34600723 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 33 |
| Conread position: | 20-382 |
| Cow position: | chr22:35906371-35906012 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 56 |
| Conread position: | 21-195 |
| Cow position: | chr22:41418312-41418139 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 23-373 |
| Cow position: | chr22:284056-283714 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 87, 31 |
| Conread position: | 24-381 |
| Cow position: | chr22:35670631-35670286 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 29-382 |
| Cow position: | chr22:3305556-3305220 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 245 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 32-372 |
| Cow position: | chr22:3273147-3272801 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 34-413 |
| Cow position: | chr22:36270226-36270615 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 37-382 |
| Cow position: | chr22:2394960-2394609 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 160, 41 |
| Conread position: | 38-382 |
| Cow position: | chr22:44397467-44397810 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 250 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 15, 32 |
| Conread position: | 39-195 |
| Cow position: | chr22:46612892-46613047 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 40-381 |
| Cow position: | chr22:1268731-1268374 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 41-370 |
| Cow position: | chr22:21035357-21035022 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 68 |
| Conread position: | 49-382 |
| Cow position: | chr22:31334008-31333665 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 117 |
| Conread position: | 55-360 |
| Cow position: | chr22:40378769-40379080 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 83, 123 |
| Conread position: | 72-382 |
| Cow position: | chr22:21195429-21195118 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 94 |
| Conread position: | 79-382 |
| Cow position: | chr22:23801130-23800838 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 117, 48 |
| Conread position: | 79-386 |
| Cow position: | chr22:6602164-6601856 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 87 |
| Conread position: | 85-381 |
| Cow position: | chr22:33351755-33352050 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 92 |
| Conread position: | 100-382 |
| Cow position: | chr22:36579188-36578893 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 93, 75 |
| Conread position: | 101-381 |
| Cow position: | chr22:7304564-7304276 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 97, 76 |
| Conread position: | 124-382 |
| Cow position: | chr22:15852530-15852802 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 67, 51 |
| Conread position: | 136-381 |
| Cow position: | chr22:8648610-8648358 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 136-381 |
| Cow position: | chr22:24951681-24951935 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 62, 41 |
| Conread position: | 142-382 |
| Cow position: | chr22:46585433-46585185 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 57, 35 |
| Conread position: | 145-382 |
| Cow position: | chr22:38550525-38550763 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 157-382 |
| Cow position: | chr22:44368325-44368103 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 42, 20 |
| Conread position: | 162-370 |
| Cow position: | chr22:44348704-44348490 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 202-382 |
| Cow position: | chr22:46614496-46614682 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 41, 144 |
| Conread position: | 222-349 |
| Cow position: | chr22:11033326-11033459 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 247-382 |
| Cow position: | chr22:30128834-30128965 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 247-382 |
| Cow position: | chr22:30146483-30146614 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.