Cow genome map

Conread name: Ss1.1-Spl1-SPL01G040079.5

Conread position: 1-166
Cow position: chr23:16614443-16614282 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 50, 66

Conread position: 1-184
Cow position: chr23:8287021-8287204 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 19, 52

Conread position: 1-221
Cow position: chr23:4639632-4639416 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 195, 33

Conread position: 1-352
Cow position: chr23:5739365-5739009 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 37

Conread position: 1-366
Cow position: chr23:1956889-1957242 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 34

Conread position: 1-374
Cow position: chr23:38669876-38669499 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 249
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 54, 153

Conread position: 1-381
Cow position: chr23:4889678-4890064 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 33

Conread position: 1-381
Cow position: chr23:31649049-31648653 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 50

Conread position: 1-382
Cow position: chr23:965502-965119 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 50

Conread position: 1-382
Cow position: chr23:1012800-1012428 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 262
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 221, 73

Conread position: 1-382
Cow position: chr23:2026088-2025705 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 53

Conread position: 1-382
Cow position: chr23:2794263-2793882 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 35

Conread position: 1-382
Cow position: chr23:4818013-4818402 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 33

Conread position: 1-382
Cow position: chr23:11779777-11780158 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 53

Conread position: 1-382
Cow position: chr23:15178066-15178447 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 63

Conread position: 1-382
Cow position: chr23:19490529-19490930 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 275
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 18, 180

Conread position: 1-383
Cow position: chr23:13512104-13512481 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 32

Conread position: 1-384
Cow position: chr23:22167663-22168023 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 268
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 194, 62

Conread position: 1-390
Cow position: chr23:36030384-36029995 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 33

Conread position: 3-258
Cow position: chr23:23171495-23171750 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 193, 33

Conread position: 3-382
Cow position: chr23:14923305-14922919 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 33

Conread position: 3-384
Cow position: chr23:21243750-21243365 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 162

Conread position: 3-411
Cow position: chr23:4361018-4361435 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 286
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 193, 33

Conread position: 6-368
Cow position: chr23:26159728-26159330 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 276
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 20, 177

Conread position: 6-371
Cow position: chr23:16498240-16497869 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 48

Conread position: 6-382
Cow position: chr23:2758886-2759276 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 28

Conread position: 6-382
Cow position: chr23:5873581-5873197 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 45

Conread position: 7-381
Cow position: chr23:3707121-3707503 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 27

Conread position: 7-382
Cow position: chr23:2576424-2576784 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 265
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 22, 45

Conread position: 9-233
Cow position: chr23:7369525-7369748 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 155
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 186, 41

Conread position: 9-382
Cow position: chr23:14262851-14263248 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 268
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 62, 16

Conread position: 9-382
Cow position: chr23:14964045-14963675 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 45

Conread position: 9-382
Cow position: chr23:15526570-15526952 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 45

Conread position: 9-382
Cow position: chr23:30237268-30237648 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 16

Conread position: 9-386
Cow position: chr23:2342079-2342461 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 271
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 89, 14

Conread position: 10-306
Cow position: chr23:6220248-6220554 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 200
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 21, 156

Conread position: 10-370
Cow position: chr23:1022961-1022592 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 161

Conread position: 10-382
Cow position: chr23:29402718-29402339 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 267
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 185, 15

Conread position: 11-382
Cow position: chr23:14972978-14972594 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 158

Conread position: 11-382
Cow position: chr23:15876564-15876189 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 262
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 188, 26

Conread position: 12-369
Cow position: chr23:38581729-38582072 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 261
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 55, 23

Conread position: 14-382
Cow position: chr23:22146306-22145931 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 40

Conread position: 17-382
Cow position: chr23:27400527-27400902 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 143

Conread position: 20-372
Cow position: chr23:781008-780657 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 241
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 90, 14

Conread position: 20-382
Cow position: chr23:14777949-14777583 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 246
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 177, 89

Conread position: 23-382
Cow position: chr23:19949579-19949211 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 143

Conread position: 29-382
Cow position: chr23:20155193-20154845 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 100

Conread position: 31-382
Cow position: chr23:29451332-29450972 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 88

Conread position: 40-381
Cow position: chr23:41142201-41141853 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 137

Conread position: 40-382
Cow position: chr23:25534347-25534667 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 230
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 52

Conread position: 40-382
Cow position: chr23:28218447-28218800 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 340

Conread position: 40-384
Cow position: chr23:618440-618095 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 108

Conread position: 42-382
Cow position: chr23:3880054-3879711 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 72

Conread position: 89-362
Cow position: chr23:23282307-23282587 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 211
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 110, 19

Conread position: 95-382
Cow position: chr23:11077103-11076805 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 27, 84

Conread position: 97-382
Cow position: chr23:21822195-21821915 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 193
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 37

Conread position: 104-389
Cow position: chr23:37716597-37716887 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 201
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 95, 22

Conread position: 112-370
Cow position: chr23:19451248-19451513 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 177
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 86, 63

Conread position: 113-433
Cow position: chr23:25682853-25682520 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 243
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 86, 63

Conread position: 150-382
Cow position: chr23:4513606-4513859 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 49, 0

Conread position: 154-382
Cow position: chr23:11714728-11714491 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 44, 27

Conread position: 158-365
Cow position: chr23:16054925-16055144 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 171
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 41, 17

Conread position: 162-382
Cow position: chr23:2718461-2718688 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 40, 214

Conread position: 175-381
Cow position: chr23:16614013-16613799 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 21, 202

Conread position: 197-381
Cow position: chr23:38691675-38691865 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 166

Conread position: 224-381
Cow position: chr23:7314126-7314284 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 64, 17

Conread position: 251-365
Cow position: chr23:8287203-8287320 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 31, 0

Show alignments to all cow chromosomes.