Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-239 |
| Cow position: | chr24:6332615-6332382 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 107, 144 |
| Conread position: | 1-289 |
| Cow position: | chr24:12109626-12109341 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 194, 66 |
| Conread position: | 1-354 |
| Cow position: | chr24:12087283-12087646 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 166 |
| Conread position: | 1-381 |
| Cow position: | chr24:38638618-38638990 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 47 |
| Conread position: | 1-382 |
| Cow position: | chr24:4414453-4414068 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 50 |
| Conread position: | 1-382 |
| Cow position: | chr24:6337469-6337855 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 32 |
| Conread position: | 1-382 |
| Cow position: | chr24:9545141-9545520 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 272 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 198, 33 |
| Conread position: | 1-382 |
| Cow position: | chr24:12238371-12238749 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 32 |
| Conread position: | 1-382 |
| Cow position: | chr24:19834474-19834869 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 49 |
| Conread position: | 1-382 |
| Cow position: | chr24:29188370-29188759 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 49 |
| Conread position: | 1-382 |
| Cow position: | chr24:36558693-36558308 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 32 |
| Conread position: | 1-386 |
| Cow position: | chr24:6129903-6130286 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 52 |
| Conread position: | 1-387 |
| Cow position: | chr24:17370889-17370520 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 198, 32 |
| Conread position: | 1-437 |
| Cow position: | chr24:22972170-22972616 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 3-338 |
| Cow position: | chr24:6085142-6085476 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-372 |
| Cow position: | chr24:13233333-13233714 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 176 |
| Conread position: | 3-381 |
| Cow position: | chr24:6024026-6023649 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | chr24:6435562-6435947 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 31 |
| Conread position: | 3-381 |
| Cow position: | chr24:12699726-12699360 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 196, 32 |
| Conread position: | 3-381 |
| Cow position: | chr24:23504783-23504396 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 3-436 |
| Cow position: | chr24:7089894-7089444 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 6-360 |
| Cow position: | chr24:35869471-35869123 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 45 |
| Conread position: | 6-379 |
| Cow position: | chr24:12150228-12149846 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 263 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 193, 20 |
| Conread position: | 6-381 |
| Cow position: | chr24:5992143-5991762 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 19 |
| Conread position: | 6-382 |
| Cow position: | chr24:147527-147147 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 27 |
| Conread position: | 9-205 |
| Cow position: | chr24:6059984-6060178 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 188, 27 |
| Conread position: | 9-340 |
| Cow position: | chr24:17409565-17409893 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 186, 28 |
| Conread position: | 9-367 |
| Cow position: | chr24:14389453-14389082 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 257 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 79, 109 |
| Conread position: | 9-372 |
| Cow position: | chr24:29408615-29408247 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 99, 17 |
| Conread position: | 9-381 |
| Cow position: | chr24:29305229-29304849 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 28 |
| Conread position: | 9-382 |
| Cow position: | chr24:35840982-35840616 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 260 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 16, 160 |
| Conread position: | 10-363 |
| Cow position: | chr24:14871227-14870880 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 254 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 111, 15 |
| Conread position: | 10-382 |
| Cow position: | chr24:19702584-19702959 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 145 |
| Conread position: | 11-348 |
| Cow position: | chr24:14754775-14755110 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 229, 40 |
| Conread position: | 11-382 |
| Cow position: | chr24:14383550-14383171 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 44 |
| Conread position: | 17-381 |
| Cow position: | chr24:7062636-7063006 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 19 |
| Conread position: | 17-382 |
| Cow position: | chr24:12163033-12163408 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 161 |
| Conread position: | 17-389 |
| Cow position: | chr24:33934481-33934860 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 263 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 18-382 |
| Cow position: | chr24:6353242-6353598 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 100 |
| Conread position: | 18-393 |
| Cow position: | chr24:6407129-6407509 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 125 |
| Conread position: | 20-372 |
| Cow position: | chr24:1450532-1450870 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 30 |
| Conread position: | 20-438 |
| Cow position: | chr24:17321808-17322249 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 157 |
| Conread position: | 23-382 |
| Cow position: | chr24:13189287-13189644 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 172, 125 |
| Conread position: | 25-315 |
| Cow position: | chr24:16083928-16083627 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 24, 153 |
| Conread position: | 26-382 |
| Cow position: | chr24:13179915-13179554 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 11 |
| Conread position: | 27-386 |
| Cow position: | chr24:6668708-6668354 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 172, 102 |
| Conread position: | 29-353 |
| Cow position: | chr24:6064645-6064337 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 81, 25 |
| Conread position: | 29-390 |
| Cow position: | chr24:6659392-6659026 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 44 |
| Conread position: | 33-382 |
| Cow position: | chr24:6060305-6060657 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 168, 132 |
| Conread position: | 38-386 |
| Cow position: | chr24:40470250-40469900 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 158, 72 |
| Conread position: | 39-382 |
| Cow position: | chr24:6142202-6142540 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 202, 85 |
| Conread position: | 43-363 |
| Cow position: | chr24:37320469-37320157 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 154, 106 |
| Conread position: | 44-384 |
| Cow position: | chr24:19640801-19641151 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 105 |
| Conread position: | 47-382 |
| Cow position: | chr24:36480833-36480504 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 146, 119 |
| Conread position: | 67-382 |
| Cow position: | chr24:14278071-14277752 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 129, 52 |
| Conread position: | 73-382 |
| Cow position: | chr24:9435791-9435474 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 79-382 |
| Cow position: | chr24:11152084-11151772 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 119, 98 |
| Conread position: | 90-381 |
| Cow position: | chr24:9090887-9090590 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 98-381 |
| Cow position: | chr24:9187570-9187278 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 98-382 |
| Cow position: | chr24:13044469-13044163 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 98, 68 |
| Conread position: | 98-382 |
| Cow position: | chr24:44018680-44018973 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 99-388 |
| Cow position: | chr24:37199711-37199431 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 100, 14 |
| Conread position: | 100-382 |
| Cow position: | chr24:16097705-16097991 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 95, 26 |
| Conread position: | 129-338 |
| Cow position: | chr24:36709783-36710005 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 67, 147 |
| Conread position: | 134-381 |
| Cow position: | chr24:40101685-40101437 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 69, 35 |
| Conread position: | 137-389 |
| Cow position: | chr24:38585908-38585646 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 59, 38 |
| Conread position: | 138-348 |
| Cow position: | chr24:13301595-13301372 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 149-382 |
| Cow position: | chr24:16561101-16560849 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 201-383 |
| Cow position: | chr24:10222893-10222708 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 117 |
| Conread position: | 203-382 |
| Cow position: | chr24:12205053-12204875 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 40, 60 |
| Conread position: | 225-382 |
| Cow position: | chr24:6324043-6323890 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 250-382 |
| Cow position: | chr24:8606148-8606281 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 30, 96 |
Show alignments to all cow chromosomes.