Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-325 |
| Cow position: | chr25:34506649-34506320 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 205 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 194, 49 |
| Conread position: | 1-358 |
| Cow position: | chr25:11931738-11931383 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 48 |
| Conread position: | 1-382 |
| Cow position: | chr25:12941632-12941244 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 32 |
| Conread position: | 1-382 |
| Cow position: | chr25:17559511-17559136 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 87 |
| Conread position: | 1-382 |
| Cow position: | chr25:18888703-18888317 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 53 |
| Conread position: | 1-382 |
| Cow position: | chr25:20630670-20631051 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 80 |
| Conread position: | 1-382 |
| Cow position: | chr25:22148580-22148959 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 53 |
| Conread position: | 1-382 |
| Cow position: | chr25:25507741-25508133 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 50 |
| Conread position: | 1-390 |
| Cow position: | chr25:13782074-13782473 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 32 |
| Conread position: | 2-382 |
| Cow position: | chr25:32988216-32987830 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 196, 23 |
| Conread position: | 3-381 |
| Cow position: | chr25:17588514-17588130 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 51 |
| Conread position: | 3-382 |
| Cow position: | chr25:18177739-18178114 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 268 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 194, 31 |
| Conread position: | 3-382 |
| Cow position: | chr25:27021542-27021163 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 34 |
| Conread position: | 3-386 |
| Cow position: | chr25:18192721-18192329 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 34 |
| Conread position: | 4-383 |
| Cow position: | chr25:18182767-18183138 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 253 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 192, 33 |
| Conread position: | 6-382 |
| Cow position: | chr25:18273726-18273344 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 112 |
| Conread position: | 9-340 |
| Cow position: | chr25:24216413-24216087 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 96, 28 |
| Conread position: | 9-354 |
| Cow position: | chr25:17655487-17655841 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 28 |
| Conread position: | 9-382 |
| Cow position: | chr25:13454533-13454165 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 9-382 |
| Cow position: | chr25:18305196-18305565 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 255 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 109, 16 |
| Conread position: | 9-382 |
| Cow position: | chr25:36636631-36636262 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 251 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 186, 28 |
| Conread position: | 9-389 |
| Cow position: | chr25:30266548-30266925 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 96, 43 |
| Conread position: | 10-183 |
| Cow position: | chr25:27525092-27524925 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 10-339 |
| Cow position: | chr25:18212863-18212530 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 36, 125 |
| Conread position: | 10-381 |
| Cow position: | chr25:15365006-15365368 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 185, 13 |
| Conread position: | 11-377 |
| Cow position: | chr25:32901967-32902338 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 12-372 |
| Cow position: | chr25:18251845-18251500 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 229, 24 |
| Conread position: | 20-382 |
| Cow position: | chr25:34345946-34345569 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 75 |
| Conread position: | 23-360 |
| Cow position: | chr25:14957389-14957039 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 14 |
| Conread position: | 26-382 |
| Cow position: | chr25:26899746-26900111 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 140 |
| Conread position: | 39-382 |
| Cow position: | chr25:24659137-24658786 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 136 |
| Conread position: | 40-381 |
| Cow position: | chr25:20774300-20773945 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 147 |
| Conread position: | 40-382 |
| Cow position: | chr25:34676954-34676608 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 75, 70 |
| Conread position: | 41-377 |
| Cow position: | chr25:11041444-11041781 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 136 |
| Conread position: | 48-390 |
| Cow position: | chr25:33576099-33575748 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 30, 105 |
| Conread position: | 67-377 |
| Cow position: | chr25:18450423-18450733 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 43, 53 |
| Conread position: | 112-381 |
| Cow position: | chr25:13693520-13693242 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 86, 65 |
| Conread position: | 136-373 |
| Cow position: | chr25:21902209-21902452 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 140-359 |
| Cow position: | chr25:18486372-18486152 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 83, 10 |
| Conread position: | 159-381 |
| Cow position: | chr25:13062514-13062284 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 39, 18 |
| Conread position: | 182-382 |
| Cow position: | chr25:27523379-27523181 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 224-382 |
| Cow position: | chr25:12757862-12757701 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 65, 17 |
Show alignments to all cow chromosomes.