Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-219 |
| Cow position: | chr27:8568207-8568418 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 84, 33 |
| Conread position: | 1-342 |
| Cow position: | chr27:27195639-27195312 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 149 |
| Conread position: | 1-371 |
| Cow position: | chr27:9992205-9991829 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 54 |
| Conread position: | 1-382 |
| Cow position: | chr27:1210350-1210734 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 53 |
| Conread position: | 1-382 |
| Cow position: | chr27:3234546-3234144 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 168 |
| Conread position: | 1-382 |
| Cow position: | chr27:9330727-9331114 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 140 |
| Conread position: | 1-382 |
| Cow position: | chr27:13898316-13898695 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 53 |
| Conread position: | 1-382 |
| Cow position: | chr27:15636352-15635963 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-382 |
| Cow position: | chr27:25803688-25803311 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 34 |
| Conread position: | 1-382 |
| Cow position: | chr27:26326068-26326441 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 53 |
| Conread position: | 1-382 |
| Cow position: | chr27:27663993-27664381 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 165 |
| Conread position: | 1-382 |
| Cow position: | chr27:28079429-28079801 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 229, 50 |
| Conread position: | 2-382 |
| Cow position: | chr27:11486309-11486679 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 117, 32 |
| Conread position: | 9-370 |
| Cow position: | chr27:25057921-25058281 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 98, 44 |
| Conread position: | 9-372 |
| Cow position: | chr27:28892599-28892970 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 9-382 |
| Cow position: | chr27:2377524-2377891 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 185, 13 |
| Conread position: | 18-340 |
| Cow position: | chr27:14459435-14459102 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 33 |
| Conread position: | 21-381 |
| Cow position: | chr27:16033389-16033024 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 261 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 35, 113 |
| Conread position: | 24-373 |
| Cow position: | chr27:23292292-23292647 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 25, 140 |
| Conread position: | 24-382 |
| Cow position: | chr27:1677567-1677191 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 135 |
| Conread position: | 55-382 |
| Cow position: | chr27:15275017-15274686 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 115 |
| Conread position: | 84-411 |
| Cow position: | chr27:26554322-26553983 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 40 |
| Conread position: | 95-382 |
| Cow position: | chr27:4980459-4980751 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 47 |
| Conread position: | 104-381 |
| Cow position: | chr27:16425824-16426105 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 105-382 |
| Cow position: | chr27:8735277-8735560 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 20, 65 |
| Conread position: | 117-372 |
| Cow position: | chr27:5912026-5912291 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 82, 13 |
| Conread position: | 129-381 |
| Cow position: | chr27:19259817-19260078 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 69, 48 |
| Conread position: | 171-341 |
| Cow position: | chr27:16552029-16552209 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 175-385 |
| Cow position: | chr27:25084744-25084960 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 99 |
| Conread position: | 224-380 |
| Cow position: | chr27:798346-798189 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 250-389 |
| Cow position: | chr27:16264599-16264740 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 128 |
Show alignments to all cow chromosomes.