Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-146 |
| Cow position: | chr28:15684279-15684428 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1-180 |
| Cow position: | chr28:5113256-5113080 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-190 |
| Cow position: | chr28:10581050-10580863 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 117, 53 |
| Conread position: | 1-246 |
| Cow position: | chr28:10072315-10072557 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 196, 35 |
| Conread position: | 1-289 |
| Cow position: | chr28:10470547-10470837 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 198, 114 |
| Conread position: | 1-345 |
| Cow position: | chr28:7741488-7741834 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 32 |
| Conread position: | 1-362 |
| Cow position: | chr28:7788854-7788495 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 36 |
| Conread position: | 1-371 |
| Cow position: | chr28:1386358-1385981 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 32 |
| Conread position: | 1-371 |
| Cow position: | chr28:32791337-32790967 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 53 |
| Conread position: | 1-382 |
| Cow position: | chr28:1505907-1506291 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 35 |
| Conread position: | 1-382 |
| Cow position: | chr28:3191215-3190828 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 53 |
| Conread position: | 1-382 |
| Cow position: | chr28:5750667-5750275 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 53 |
| Conread position: | 1-382 |
| Cow position: | chr28:7003036-7003422 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 49 |
| Conread position: | 1-382 |
| Cow position: | chr28:8380102-8380461 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 174 |
| Conread position: | 1-382 |
| Cow position: | chr28:12151345-12151733 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 194, 165 |
| Conread position: | 1-382 |
| Cow position: | chr28:13461014-13461404 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 114 |
| Conread position: | 1-382 |
| Cow position: | chr28:14704347-14703961 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-382 |
| Cow position: | chr28:17666266-17665883 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 53 |
| Conread position: | 1-382 |
| Cow position: | chr28:18519409-18519023 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 33 |
| Conread position: | 1-382 |
| Cow position: | chr28:22260111-22259726 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 53 |
| Conread position: | 1-382 |
| Cow position: | chr28:26425215-26424828 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 53 |
| Conread position: | 1-385 |
| Cow position: | chr28:7811490-7811839 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 196, 31 |
| Conread position: | 1-390 |
| Cow position: | chr28:8719906-8719527 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 2-371 |
| Cow position: | chr28:5803080-5803446 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 252 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 191, 23 |
| Conread position: | 2-381 |
| Cow position: | chr28:22042234-22041862 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 273 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 196, 52 |
| Conread position: | 3-233 |
| Cow position: | chr28:7027215-7026986 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-255 |
| Cow position: | chr28:6538222-6537970 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 193, 51 |
| Conread position: | 3-381 |
| Cow position: | chr28:1954396-1954783 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | chr28:7827023-7827413 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 167 |
| Conread position: | 3-381 |
| Cow position: | chr28:9179668-9180040 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 30 |
| Conread position: | 3-382 |
| Cow position: | chr28:484554-484169 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 30 |
| Conread position: | 3-382 |
| Cow position: | chr28:24589896-24590281 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 175 |
| Conread position: | 6-203 |
| Cow position: | chr28:2988038-2987846 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 189, 31 |
| Conread position: | 6-382 |
| Cow position: | chr28:1166833-1166465 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 48 |
| Conread position: | 6-382 |
| Cow position: | chr28:5938530-5938912 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 44 |
| Conread position: | 6-389 |
| Cow position: | chr28:15035071-15034680 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 14, 107 |
| Conread position: | 7-368 |
| Cow position: | chr28:14232885-14232516 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 192, 47 |
| Conread position: | 9-308 |
| Cow position: | chr28:24883927-24883630 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 187, 79 |
| Conread position: | 9-354 |
| Cow position: | chr28:24668660-24669008 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 24 |
| Conread position: | 9-375 |
| Cow position: | chr28:10496481-10496110 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 42 |
| Conread position: | 9-382 |
| Cow position: | chr28:5799346-5799715 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 45 |
| Conread position: | 9-382 |
| Cow position: | chr28:29821044-29821423 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 45 |
| Conread position: | 9-382 |
| Cow position: | chr28:33253371-33253733 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 273 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 190, 25 |
| Conread position: | 9-390 |
| Cow position: | chr28:15587140-15587521 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 190, 45 |
| Conread position: | 10-353 |
| Cow position: | chr28:10460556-10460209 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 188, 23 |
| Conread position: | 14-382 |
| Cow position: | chr28:2085513-2085889 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 19 |
| Conread position: | 17-382 |
| Cow position: | chr28:21360551-21360916 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 19 |
| Conread position: | 18-382 |
| Cow position: | chr28:21566508-21566882 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 119 |
| Conread position: | 29-361 |
| Cow position: | chr28:28439880-28440215 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 85, 25 |
| Conread position: | 29-382 |
| Cow position: | chr28:6778877-6778514 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 148 |
| Conread position: | 34-355 |
| Cow position: | chr28:14194464-14194148 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 158, 43 |
| Conread position: | 39-411 |
| Cow position: | chr28:22232202-22231807 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 136 |
| Conread position: | 40-358 |
| Cow position: | chr28:18146657-18146334 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 155, 55 |
| Conread position: | 45-382 |
| Cow position: | chr28:783739-784087 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 130 |
| Conread position: | 50-409 |
| Cow position: | chr28:25760590-25760955 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 99, 34 |
| Conread position: | 55-378 |
| Cow position: | chr28:34314059-34314375 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 59 |
| Conread position: | 62-391 |
| Cow position: | chr28:5913359-5913029 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 55, 109 |
| Conread position: | 63-351 |
| Cow position: | chr28:5567240-5567536 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 94 |
| Conread position: | 82-382 |
| Cow position: | chr28:17389520-17389826 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 93 |
| Conread position: | 83-382 |
| Cow position: | chr28:10646301-10646006 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 112, 54 |
| Conread position: | 101-300 |
| Cow position: | chr28:13374117-13373912 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 95, 65 |
| Conread position: | 103-382 |
| Cow position: | chr28:5765879-5766155 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 96, 27 |
| Conread position: | 119-382 |
| Cow position: | chr28:12648526-12648250 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 200-378 |
| Cow position: | chr28:2117216-2117399 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 36, 93 |
| Conread position: | 202-382 |
| Cow position: | chr28:15684698-15684877 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 237-367 |
| Cow position: | chr28:6786543-6786673 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 250-381 |
| Cow position: | chr28:1459385-1459518 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 38, 121 |
| Conread position: | 250-382 |
| Cow position: | chr28:34595523-34595656 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 120 |
Show alignments to all cow chromosomes.