Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-245 |
| Cow position: | chr29:14210563-14210322 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 241, 32 |
| Conread position: | 1-265 |
| Cow position: | chr29:27262891-27262627 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 194, 33 |
| Conread position: | 1-352 |
| Cow position: | chr29:43323563-43323916 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 125 |
| Conread position: | 1-367 |
| Cow position: | chr29:7430213-7429833 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 53 |
| Conread position: | 1-371 |
| Cow position: | chr29:32891791-32892170 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 260 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 122, 53 |
| Conread position: | 1-381 |
| Cow position: | chr29:45205505-45205899 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-382 |
| Cow position: | chr29:5981709-5981320 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 32 |
| Conread position: | 1-382 |
| Cow position: | chr29:14586926-14587307 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 117 |
| Conread position: | 1-382 |
| Cow position: | chr29:16023575-16023952 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 53 |
| Conread position: | 1-382 |
| Cow position: | chr29:19654634-19655018 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 32 |
| Conread position: | 1-382 |
| Cow position: | chr29:20252170-20252548 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 165 |
| Conread position: | 1-382 |
| Cow position: | chr29:38227983-38228366 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-382 |
| Cow position: | chr29:39078700-39078323 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 53 |
| Conread position: | 1-382 |
| Cow position: | chr29:40501975-40501610 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 82, 53 |
| Conread position: | 1-383 |
| Cow position: | chr29:19622278-19621888 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 33 |
| Conread position: | 1-384 |
| Cow position: | chr29:15946818-15946427 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 119, 57 |
| Conread position: | 1-389 |
| Cow position: | chr29:10647244-10646855 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 54 |
| Conread position: | 1-391 |
| Cow position: | chr29:13651062-13651434 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 196, 50 |
| Conread position: | 1-395 |
| Cow position: | chr29:23977126-23977528 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 134 |
| Conread position: | 1-438 |
| Cow position: | chr29:47432-46979 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 32 |
| Conread position: | 2-385 |
| Cow position: | chr29:34525248-34525634 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 143, 52 |
| Conread position: | 3-263 |
| Cow position: | chr29:19886083-19886341 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 46, 163 |
| Conread position: | 3-377 |
| Cow position: | chr29:7845394-7845776 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 3-377 |
| Cow position: | chr29:31096375-31095994 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | chr29:13583087-13583469 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 12 |
| Conread position: | 3-381 |
| Cow position: | chr29:18855943-18855558 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 3-381 |
| Cow position: | chr29:27979917-27979533 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | chr29:31182411-31182795 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | chr29:42939192-42938805 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 163 |
| Conread position: | 3-382 |
| Cow position: | chr29:35814968-35814582 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 5-382 |
| Cow position: | chr29:2100858-2101227 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 160 |
| Conread position: | 6-355 |
| Cow position: | chr29:21426018-21425652 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 261 |
| Conread position: | 6-382 |
| Cow position: | chr29:26163822-26163446 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 27 |
| Conread position: | 6-382 |
| Cow position: | chr29:32541104-32541489 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 45 |
| Conread position: | 6-390 |
| Cow position: | chr29:10822973-10822575 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 28 |
| Conread position: | 9-315 |
| Cow position: | chr29:9620431-9620733 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 101, 28 |
| Conread position: | 9-365 |
| Cow position: | chr29:6213538-6213895 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 190, 45 |
| Conread position: | 9-382 |
| Cow position: | chr29:2747424-2747055 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 13 |
| Conread position: | 9-382 |
| Cow position: | chr29:34798796-34798423 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 45 |
| Conread position: | 9-382 |
| Cow position: | chr29:38237512-38237132 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 263 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 9-389 |
| Cow position: | chr29:14085115-14084734 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 102 |
| Conread position: | 11-349 |
| Cow position: | chr29:34873830-34874160 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 6, 27 |
| Conread position: | 16-384 |
| Cow position: | chr29:25931514-25931136 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 161 |
| Conread position: | 17-381 |
| Cow position: | chr29:2465834-2465466 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 252 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 178, 37 |
| Conread position: | 18-289 |
| Cow position: | chr29:16111406-16111684 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 20-381 |
| Cow position: | chr29:15997632-15997263 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 31 |
| Conread position: | 20-382 |
| Cow position: | chr29:45460753-45461135 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 360 |
| Conread position: | 22-191 |
| Cow position: | chr29:6265241-6265074 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 24-371 |
| Cow position: | chr29:38207648-38207285 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 174, 13 |
| Conread position: | 27-381 |
| Cow position: | chr29:14112574-14112920 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 81, 67 |
| Conread position: | 28-382 |
| Cow position: | chr29:8664554-8664901 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 170, 80 |
| Conread position: | 32-354 |
| Cow position: | chr29:5958625-5958948 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 76, 59 |
| Conread position: | 39-381 |
| Cow position: | chr29:10849794-10850137 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 162, 127 |
| Conread position: | 40-381 |
| Cow position: | chr29:3328376-3328726 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 126 |
| Conread position: | 45-371 |
| Cow position: | chr29:45586334-45586006 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 29 |
| Conread position: | 58-367 |
| Cow position: | chr29:30259463-30259159 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 90 |
| Conread position: | 61-382 |
| Cow position: | chr29:3699022-3699341 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 141, 45 |
| Conread position: | 63-380 |
| Cow position: | chr29:2840274-2839956 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 63-382 |
| Cow position: | chr29:32804486-32804800 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 79-278 |
| Cow position: | chr29:32287262-32287472 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 116, 38 |
| Conread position: | 91-381 |
| Cow position: | chr29:32558668-32558364 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 95-382 |
| Cow position: | chr29:5236114-5236409 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 104, 82 |
| Conread position: | 96-382 |
| Cow position: | chr29:16345304-16345602 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 98-381 |
| Cow position: | chr29:13622757-13622471 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 101, 79 |
| Conread position: | 98-381 |
| Cow position: | chr29:42092860-42093152 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 98-382 |
| Cow position: | chr29:609537-609256 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 101, 51 |
| Conread position: | 101-325 |
| Cow position: | chr29:35297920-35298154 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 95, 65 |
| Conread position: | 132-382 |
| Cow position: | chr29:9642657-9642399 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 171-382 |
| Cow position: | chr29:6264828-6264612 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 26, 202 |
| Conread position: | 171-383 |
| Cow position: | chr29:2691337-2691553 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 28, 129 |
| Conread position: | 189-382 |
| Cow position: | chr29:36635197-36634997 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 202-381 |
| Cow position: | chr29:6198544-6198366 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 86, 26 |
| Conread position: | 220-389 |
| Cow position: | chr29:32287471-32287642 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 69, 151 |
| Conread position: | 224-381 |
| Cow position: | chr29:21431623-21431464 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 227-381 |
| Cow position: | chr29:27180521-27180366 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 243-381 |
| Cow position: | chr29:10023085-10022945 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 45, 128 |
| Conread position: | 246-381 |
| Cow position: | chr29:29503009-29502872 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 42, 125 |
| Conread position: | 251-382 |
| Cow position: | chr29:27262461-27262326 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 122 |
Show alignments to all cow chromosomes.