Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-245 |
| Cow position: | |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 241, 32 |
| Conread position: | 1-265 |
| Cow position: | |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 194, 33 |
| Conread position: | 1-352 |
| Cow position: | |
| Alignm length: | 357 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 125 |
| Conread position: | 1-367 |
| Cow position: | |
| Alignm length: | 384 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 53 |
| Conread position: | 1-371 |
| Cow position: | |
| Alignm length: | 384 |
| Alignm identity: | 260 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 122, 53 |
| Conread position: | 1-381 |
| Cow position: | |
| Alignm length: | 400 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-382 |
| Cow position: | |
| Alignm length: | 399 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 32 |
| Conread position: | 1-382 |
| Cow position: | |
| Alignm length: | 390 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 117 |
| Conread position: | 1-382 |
| Cow position: | |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 53 |
| Conread position: | 1-382 |
| Cow position: | |
| Alignm length: | 391 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 32 |
| Conread position: | 1-382 |
| Cow position: | |
| Alignm length: | 391 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 165 |
| Conread position: | 1-382 |
| Cow position: | |
| Alignm length: | 388 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-382 |
| Cow position: | |
| Alignm length: | 392 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 53 |
| Conread position: | 1-382 |
| Cow position: | |
| Alignm length: | 385 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 82, 53 |
| Conread position: | 1-383 |
| Cow position: | |
| Alignm length: | 395 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 33 |
| Conread position: | 1-384 |
| Cow position: | |
| Alignm length: | 408 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 119, 57 |
| Conread position: | 1-389 |
| Cow position: | |
| Alignm length: | 397 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 54 |
| Conread position: | 1-391 |
| Cow position: | |
| Alignm length: | 400 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 196, 50 |
| Conread position: | 1-395 |
| Cow position: | |
| Alignm length: | 409 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 134 |
| Conread position: | 1-438 |
| Cow position: | |
| Alignm length: | 459 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 32 |
| Conread position: | 2-385 |
| Cow position: | |
| Alignm length: | 394 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 143, 52 |
| Conread position: | 3-263 |
| Cow position: | |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 46, 163 |
| Conread position: | 3-377 |
| Cow position: | |
| Alignm length: | 386 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 3-377 |
| Cow position: | |
| Alignm length: | 387 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | |
| Alignm length: | 390 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 12 |
| Conread position: | 3-381 |
| Cow position: | |
| Alignm length: | 390 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 3-381 |
| Cow position: | |
| Alignm length: | 391 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | |
| Alignm length: | 390 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 163 |
| Conread position: | 3-382 |
| Cow position: | |
| Alignm length: | 391 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 5-382 |
| Cow position: | |
| Alignm length: | 381 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 160 |
| Conread position: | 6-355 |
| Cow position: | |
| Alignm length: | 368 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 261 |
| Conread position: | 6-382 |
| Cow position: | |
| Alignm length: | 386 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 27 |
| Conread position: | 6-382 |
| Cow position: | |
| Alignm length: | 389 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 45 |
| Conread position: | 6-390 |
| Cow position: | |
| Alignm length: | 402 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 28 |
| Conread position: | 9-315 |
| Cow position: | |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 101, 28 |
| Conread position: | 9-365 |
| Cow position: | |
| Alignm length: | 365 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 190, 45 |
| Conread position: | 9-382 |
| Cow position: | |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 13 |
| Conread position: | 9-382 |
| Cow position: | |
| Alignm length: | 379 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 45 |
| Conread position: | 9-382 |
| Cow position: | |
| Alignm length: | 388 |
| Alignm identity: | 263 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 9-389 |
| Cow position: | |
| Alignm length: | 389 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 102 |
| Conread position: | 11-349 |
| Cow position: | |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 6, 27 |
| Conread position: | 16-384 |
| Cow position: | |
| Alignm length: | 383 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 161 |
| Conread position: | 17-381 |
| Cow position: | |
| Alignm length: | 373 |
| Alignm identity: | 252 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 178, 37 |
| Conread position: | 18-289 |
| Cow position: | |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 31, 96 |
| Conread position: | 20-381 |
| Cow position: | |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 31 |
| Conread position: | 20-382 |
| Cow position: | |
| Alignm length: | 385 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 360 |
| Conread position: | 22-191 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 24-371 |
| Cow position: | |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 174, 13 |
| Conread position: | 27-381 |
| Cow position: | |
| Alignm length: | 362 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 81, 67 |
| Conread position: | 28-382 |
| Cow position: | |
| Alignm length: | 366 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 170, 80 |
| Conread position: | 32-354 |
| Cow position: | |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 76, 59 |
| Conread position: | 39-381 |
| Cow position: | |
| Alignm length: | 349 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 162, 127 |
| Conread position: | 40-381 |
| Cow position: | |
| Alignm length: | 353 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 126 |
| Conread position: | 45-371 |
| Cow position: | |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 29 |
| Conread position: | 58-367 |
| Cow position: | |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 42, 90 |
| Conread position: | 61-382 |
| Cow position: | |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 141, 45 |
| Conread position: | 63-380 |
| Cow position: | |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 63-382 |
| Cow position: | |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 79-278 |
| Cow position: | |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 116, 38 |
| Conread position: | 91-381 |
| Cow position: | |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 90 |
| Conread position: | 95-382 |
| Cow position: | |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 104, 82 |
| Conread position: | 96-382 |
| Cow position: | |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 98-381 |
| Cow position: | |
| Alignm length: | 290 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 101, 79 |
| Conread position: | 98-381 |
| Cow position: | |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 98-382 |
| Cow position: | |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 101, 51 |
| Conread position: | 101-325 |
| Cow position: | |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 95, 65 |
| Conread position: | 132-382 |
| Cow position: | |
| Alignm length: | 262 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 171-382 |
| Cow position: | |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 26, 202 |
| Conread position: | 171-383 |
| Cow position: | |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 28, 129 |
| Conread position: | 189-382 |
| Cow position: | |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 202-381 |
| Cow position: | |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 86, 26 |
| Conread position: | 220-389 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 69, 151 |
| Conread position: | 224-381 |
| Cow position: | |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 227-381 |
| Cow position: | |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 243-381 |
| Cow position: | |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 45, 128 |
| Conread position: | 246-381 |
| Cow position: | |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 42, 125 |
| Conread position: | 251-382 |
| Cow position: | |
| Alignm length: | 137 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 122 |
Show alignments to all cow chromosomes.