Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-172 |
| Cow position: | chr3:18541221-18541050 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 156, 53 |
| Conread position: | 1-245 |
| Cow position: | chr3:75040240-75039997 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 194, 32 |
| Conread position: | 1-280 |
| Cow position: | chr3:66621103-66621383 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 194, 33 |
| Conread position: | 1-320 |
| Cow position: | chr3:40343041-40343369 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 95, 50 |
| Conread position: | 1-356 |
| Cow position: | chr3:64356874-64356519 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 35 |
| Conread position: | 1-371 |
| Cow position: | chr3:15181283-15181644 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 24 |
| Conread position: | 1-371 |
| Cow position: | chr3:79314848-79315219 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 119, 25 |
| Conread position: | 1-373 |
| Cow position: | chr3:63002622-63002251 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 53 |
| Conread position: | 1-378 |
| Cow position: | chr3:67164205-67164580 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 77 |
| Conread position: | 1-380 |
| Cow position: | chr3:6686727-6687100 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 36 |
| Conread position: | 1-381 |
| Cow position: | chr3:40824309-40824696 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-381 |
| Cow position: | chr3:49544290-49543901 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 33 |
| Conread position: | 1-381 |
| Cow position: | chr3:56339498-56339114 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 200, 141 |
| Conread position: | 1-382 |
| Cow position: | chr3:2709948-2709563 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 32 |
| Conread position: | 1-382 |
| Cow position: | chr3:18812421-18812802 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 32 |
| Conread position: | 1-382 |
| Cow position: | chr3:21181780-21181389 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 49 |
| Conread position: | 1-382 |
| Cow position: | chr3:38494155-38494545 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 166 |
| Conread position: | 1-382 |
| Cow position: | chr3:48229561-48229171 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 119 |
| Conread position: | 1-382 |
| Cow position: | chr3:49136640-49136261 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 33 |
| Conread position: | 1-382 |
| Cow position: | chr3:57483810-57483419 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 34 |
| Conread position: | 1-382 |
| Cow position: | chr3:59862293-59862682 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 167 |
| Conread position: | 1-382 |
| Cow position: | chr3:64016459-64016061 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 177 |
| Conread position: | 1-382 |
| Cow position: | chr3:72630994-72631370 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 53 |
| Conread position: | 1-382 |
| Cow position: | chr3:78026500-78026109 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 53 |
| Conread position: | 1-384 |
| Cow position: | chr3:48058436-48058055 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 32 |
| Conread position: | 1-390 |
| Cow position: | chr3:42448026-42448428 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 55 |
| Conread position: | 2-381 |
| Cow position: | chr3:64651554-64651940 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 23 |
| Conread position: | 2-382 |
| Cow position: | chr3:50916255-50916648 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 32 |
| Conread position: | 2-382 |
| Cow position: | chr3:64823027-64823411 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 192, 52 |
| Conread position: | 3-212 |
| Cow position: | chr3:63915193-63914984 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-355 |
| Cow position: | chr3:7170122-7170481 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-372 |
| Cow position: | chr3:18860335-18860711 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | chr3:1742253-1742634 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 51 |
| Conread position: | 3-381 |
| Cow position: | chr3:2918385-2918772 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | chr3:4287007-4287392 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 32 |
| Conread position: | 3-381 |
| Cow position: | chr3:7157802-7157417 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | chr3:19800254-19799869 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 33 |
| Conread position: | 3-381 |
| Cow position: | chr3:19879576-19879947 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 51 |
| Conread position: | 3-381 |
| Cow position: | chr3:27919345-27919730 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | chr3:36863540-36863155 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 51 |
| Conread position: | 3-381 |
| Cow position: | chr3:45033670-45034042 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 46, 86 |
| Conread position: | 3-381 |
| Cow position: | chr3:47080491-47080107 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 30 |
| Conread position: | 3-381 |
| Cow position: | chr3:57753718-57754103 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 22 |
| Conread position: | 3-381 |
| Cow position: | chr3:74058460-74058829 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 31 |
| Conread position: | 3-382 |
| Cow position: | chr3:6877247-6876870 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 122 |
| Conread position: | 3-382 |
| Cow position: | chr3:30618003-30617616 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 31 |
| Conread position: | 3-382 |
| Cow position: | chr3:34506425-34506040 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 22 |
| Conread position: | 3-382 |
| Cow position: | chr3:37969964-37970350 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 32 |
| Conread position: | 6-361 |
| Cow position: | chr3:45975428-45975782 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 6-382 |
| Cow position: | chr3:30315478-30315853 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 6-386 |
| Cow position: | chr3:5884469-5884845 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 274 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 180, 48 |
| Conread position: | 7-318 |
| Cow position: | chr3:83232208-83231894 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 187, 47 |
| Conread position: | 7-381 |
| Cow position: | chr3:19720754-19720377 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 178, 16 |
| Conread position: | 9-193 |
| Cow position: | chr3:49271185-49271003 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 28 |
| Conread position: | 9-233 |
| Cow position: | chr3:48561038-48560806 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 77, 43 |
| Conread position: | 9-367 |
| Cow position: | chr3:42052229-42051873 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 100, 25 |
| Conread position: | 9-373 |
| Cow position: | chr3:37625925-37626280 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 272, 16 |
| Conread position: | 9-373 |
| Cow position: | chr3:55892340-55892700 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 105, 45 |
| Conread position: | 9-377 |
| Cow position: | chr3:78909237-78908867 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 74, 16 |
| Conread position: | 9-380 |
| Cow position: | chr3:4736943-4736592 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 190, 27 |
| Conread position: | 9-380 |
| Cow position: | chr3:10240585-10240963 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 101 |
| Conread position: | 9-381 |
| Cow position: | chr3:42994740-42994372 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 190, 45 |
| Conread position: | 9-382 |
| Cow position: | chr3:2906843-2906465 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 45 |
| Conread position: | 9-382 |
| Cow position: | chr3:7478995-7478613 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 45 |
| Conread position: | 9-382 |
| Cow position: | chr3:23289406-23289030 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 45 |
| Conread position: | 9-390 |
| Cow position: | chr3:43306024-43305656 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 9-410 |
| Cow position: | chr3:52653718-52653317 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 138, 13 |
| Conread position: | 10-245 |
| Cow position: | chr3:11198626-11198388 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 10, 78 |
| Conread position: | 10-363 |
| Cow position: | chr3:46016975-46017331 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 16 |
| Conread position: | 10-377 |
| Cow position: | chr3:15054743-15054394 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 42 |
| Conread position: | 10-382 |
| Cow position: | chr3:19939814-19940199 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 158 |
| Conread position: | 11-360 |
| Cow position: | chr3:33845750-33845399 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 92, 25 |
| Conread position: | 11-380 |
| Cow position: | chr3:37953067-37952689 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 97, 41 |
| Conread position: | 11-382 |
| Cow position: | chr3:5994158-5993776 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 79, 40 |
| Conread position: | 12-364 |
| Cow position: | chr3:19756005-19755648 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 42 |
| Conread position: | 12-382 |
| Cow position: | chr3:56100758-56100377 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 263 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 5, 25 |
| Conread position: | 15-381 |
| Cow position: | chr3:6783298-6783670 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 19 |
| Conread position: | 16-209 |
| Cow position: | chr3:50126680-50126483 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 18-377 |
| Cow position: | chr3:68699034-68698674 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 257 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 18-382 |
| Cow position: | chr3:24445141-24444769 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 16 |
| Conread position: | 18-382 |
| Cow position: | chr3:24458238-24457881 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 34, 98 |
| Conread position: | 20-278 |
| Cow position: | chr3:19945181-19945433 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 177, 17 |
| Conread position: | 20-381 |
| Cow position: | chr3:2869725-2870091 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 129 |
| Conread position: | 20-381 |
| Cow position: | chr3:32622094-32621738 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 258 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 178, 105 |
| Conread position: | 20-381 |
| Cow position: | chr3:46860354-46859987 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 78 |
| Conread position: | 20-382 |
| Cow position: | chr3:46503493-46503861 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 34 |
| Conread position: | 21-382 |
| Cow position: | chr3:24644172-24644528 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 32 |
| Conread position: | 21-382 |
| Cow position: | chr3:56146252-56146607 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 5 |
| Conread position: | 21-382 |
| Cow position: | chr3:66890033-66889663 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 145 |
| Conread position: | 24-339 |
| Cow position: | chr3:47177330-47177006 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 174, 10 |
| Conread position: | 25-367 |
| Cow position: | chr3:39880061-39879724 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 180, 29 |
| Conread position: | 28-297 |
| Cow position: | chr3:32612504-32612231 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 136 |
| Conread position: | 30-382 |
| Cow position: | chr3:3057754-3058119 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 165, 26 |
| Conread position: | 30-382 |
| Cow position: | chr3:36118850-36119184 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 168, 58 |
| Conread position: | 37-370 |
| Cow position: | chr3:3523970-3524318 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 45, 144 |
| Conread position: | 37-382 |
| Cow position: | chr3:53516558-53516908 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 81 |
| Conread position: | 38-382 |
| Cow position: | chr3:56398141-56398490 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 82, 32 |
| Conread position: | 39-382 |
| Cow position: | chr3:19832963-19832614 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 75 |
| Conread position: | 39-382 |
| Cow position: | chr3:24346919-24347253 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 82 |
| Conread position: | 40-377 |
| Cow position: | chr3:48843208-48843555 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 89 |
| Conread position: | 40-381 |
| Cow position: | chr3:41209649-41209299 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 126 |
| Conread position: | 40-381 |
| Cow position: | chr3:68872793-68872452 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 197, 137 |
| Conread position: | 41-349 |
| Cow position: | chr3:12678883-12678574 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 94, 89 |
| Conread position: | 41-382 |
| Cow position: | chr3:70888099-70888442 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 249 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 154, 77 |
| Conread position: | 43-257 |
| Cow position: | chr3:56326851-56327064 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 152, 111 |
| Conread position: | 43-289 |
| Cow position: | chr3:25499731-25499473 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 124 |
| Conread position: | 43-381 |
| Cow position: | chr3:40339189-40338845 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 106 |
| Conread position: | 57-406 |
| Cow position: | chr3:65208169-65208543 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 138, 112 |
| Conread position: | 60-382 |
| Cow position: | chr3:36877682-36877348 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 62-382 |
| Cow position: | chr3:2854466-2854142 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 49, 110 |
| Conread position: | 63-386 |
| Cow position: | chr3:24588471-24588156 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 116 |
| Conread position: | 74-367 |
| Cow position: | chr3:56635586-56635881 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 102 |
| Conread position: | 77-389 |
| Cow position: | chr3:13476384-13476692 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 97-381 |
| Cow position: | chr3:56295198-56295490 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 101, 80 |
| Conread position: | 98-378 |
| Cow position: | chr3:18354993-18354709 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 27, 64 |
| Conread position: | 98-381 |
| Cow position: | chr3:2368326-2368034 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 98-381 |
| Cow position: | chr3:20382038-20382331 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 98-381 |
| Cow position: | chr3:29330278-29329987 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 98-381 |
| Cow position: | chr3:30331110-30330817 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 98-381 |
| Cow position: | chr3:35963997-35964289 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 98-381 |
| Cow position: | chr3:64027124-64026832 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 98-382 |
| Cow position: | chr3:7247555-7247843 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 215 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 144, 79 |
| Conread position: | 105-373 |
| Cow position: | chr3:77424643-77424912 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 206 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 34, 8 |
| Conread position: | 106-382 |
| Cow position: | chr3:595160-595440 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 93, 7 |
| Conread position: | 115-370 |
| Cow position: | chr3:33634138-33634394 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 34 |
| Conread position: | 116-382 |
| Cow position: | chr3:63255172-63255446 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 83, 18 |
| Conread position: | 120-367 |
| Cow position: | chr3:47087336-47087591 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 136-382 |
| Cow position: | chr3:33843762-33843514 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 86, 11 |
| Conread position: | 162-382 |
| Cow position: | chr3:38867392-38867621 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 37, 216 |
| Conread position: | 166-383 |
| Cow position: | chr3:3840431-3840202 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 33, 192 |
| Conread position: | 172-390 |
| Cow position: | chr3:42720608-42720388 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 25, 193 |
| Conread position: | 174-382 |
| Cow position: | chr3:72671439-72671224 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 25, 122 |
| Conread position: | 175-383 |
| Cow position: | chr3:51939012-51938786 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 177-382 |
| Cow position: | chr3:31416109-31416324 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 131 |
| Conread position: | 181-381 |
| Cow position: | chr3:51364693-51364483 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 17, 198 |
| Conread position: | 186-433 |
| Cow position: | chr3:746652-746401 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 57 |
| Conread position: | 224-389 |
| Cow position: | chr3:58948685-58948847 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 237-381 |
| Cow position: | chr3:29575966-29575821 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 6 |
| Conread position: | 246-382 |
| Cow position: | chr3:23206704-23206568 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 49, 40 |
| Conread position: | 250-362 |
| Cow position: | chr3:63241067-63240958 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 251-382 |
| Cow position: | chr3:44925232-44925366 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 37, 121 |
| Conread position: | 253-382 |
| Cow position: | chr3:2509867-2509735 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 264-385 |
| Cow position: | chr3:18462648-18462520 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.