Cow genome map

Conread name: Ss1.1-Spl1-SPL01G040079.5

Conread position: 1-172
Cow position:
Alignm length: 174
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 156, 53

Conread position: 1-245
Cow position:
Alignm length: 248
Alignm identity: 176
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 194, 32

Conread position: 1-280
Cow position:
Alignm length: 288
Alignm identity: 199
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 194, 33

Conread position: 1-320
Cow position:
Alignm length: 333
Alignm identity: 237
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 95, 50

Conread position: 1-356
Cow position:
Alignm length: 367
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 35

Conread position: 1-371
Cow position:
Alignm length: 378
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 24

Conread position: 1-371
Cow position:
Alignm length: 381
Alignm identity: 253
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 119, 25

Conread position: 1-373
Cow position:
Alignm length: 382
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 53

Conread position: 1-378
Cow position:
Alignm length: 386
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 77

Conread position: 1-380
Cow position:
Alignm length: 384
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 36

Conread position: 1-381
Cow position:
Alignm length: 392
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 53

Conread position: 1-381
Cow position:
Alignm length: 393
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 33

Conread position: 1-381
Cow position:
Alignm length: 391
Alignm identity: 260
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 200, 141

Conread position: 1-382
Cow position:
Alignm length: 393
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 32

Conread position: 1-382
Cow position:
Alignm length: 390
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 32

Conread position: 1-382
Cow position:
Alignm length: 396
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 49

Conread position: 1-382
Cow position:
Alignm length: 394
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 166

Conread position: 1-382
Cow position:
Alignm length: 393
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 119

Conread position: 1-382
Cow position:
Alignm length: 397
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 33

Conread position: 1-382
Cow position:
Alignm length: 397
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 34

Conread position: 1-382
Cow position:
Alignm length: 394
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 167

Conread position: 1-382
Cow position:
Alignm length: 401
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 177

Conread position: 1-382
Cow position:
Alignm length: 394
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 53

Conread position: 1-382
Cow position:
Alignm length: 397
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 53

Conread position: 1-384
Cow position:
Alignm length: 395
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 32

Conread position: 1-390
Cow position:
Alignm length: 407
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 55

Conread position: 2-381
Cow position:
Alignm length: 391
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 23

Conread position: 2-382
Cow position:
Alignm length: 399
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 32

Conread position: 2-382
Cow position:
Alignm length: 394
Alignm identity: 264
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 192, 52

Conread position: 3-212
Cow position:
Alignm length: 212
Alignm identity: 146
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 193, 33

Conread position: 3-355
Cow position:
Alignm length: 364
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 33

Conread position: 3-372
Cow position:
Alignm length: 381
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 33

Conread position: 3-381
Cow position:
Alignm length: 388
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 51

Conread position: 3-381
Cow position:
Alignm length: 392
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 33

Conread position: 3-381
Cow position:
Alignm length: 390
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 32

Conread position: 3-381
Cow position:
Alignm length: 390
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 33

Conread position: 3-381
Cow position:
Alignm length: 391
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 33

Conread position: 3-381
Cow position:
Alignm length: 390
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 51

Conread position: 3-381
Cow position:
Alignm length: 391
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 33

Conread position: 3-381
Cow position:
Alignm length: 391
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 51

Conread position: 3-381
Cow position:
Alignm length: 389
Alignm identity: 265
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 46, 86

Conread position: 3-381
Cow position:
Alignm length: 390
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 30

Conread position: 3-381
Cow position:
Alignm length: 390
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 22

Conread position: 3-381
Cow position:
Alignm length: 385
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 31

Conread position: 3-382
Cow position:
Alignm length: 387
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 122

Conread position: 3-382
Cow position:
Alignm length: 391
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 31

Conread position: 3-382
Cow position:
Alignm length: 392
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 22

Conread position: 3-382
Cow position:
Alignm length: 391
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 32

Conread position: 6-361
Cow position:
Alignm length: 375
Alignm identity: 266
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 35, 28

Conread position: 6-382
Cow position:
Alignm length: 383
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 31

Conread position: 6-386
Cow position:
Alignm length: 394
Alignm identity: 274
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 180, 48

Conread position: 7-318
Cow position:
Alignm length: 323
Alignm identity: 211
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 187, 47

Conread position: 7-381
Cow position:
Alignm length: 386
Alignm identity: 251
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 178, 16

Conread position: 9-193
Cow position:
Alignm length: 186
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 90, 28

Conread position: 9-233
Cow position:
Alignm length: 235
Alignm identity: 158
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 77, 43

Conread position: 9-367
Cow position:
Alignm length: 368
Alignm identity: 250
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 100, 25

Conread position: 9-373
Cow position:
Alignm length: 372
Alignm identity: 253
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 272, 16

Conread position: 9-373
Cow position:
Alignm length: 369
Alignm identity: 247
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 105, 45

Conread position: 9-377
Cow position:
Alignm length: 378
Alignm identity: 238
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 74, 16

Conread position: 9-380
Cow position:
Alignm length: 376
Alignm identity: 247
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 190, 27

Conread position: 9-380
Cow position:
Alignm length: 381
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 101

Conread position: 9-381
Cow position:
Alignm length: 382
Alignm identity: 259
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 190, 45

Conread position: 9-382
Cow position:
Alignm length: 388
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 45

Conread position: 9-382
Cow position:
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 45

Conread position: 9-382
Cow position:
Alignm length: 384
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 45

Conread position: 9-390
Cow position:
Alignm length: 386
Alignm identity: 244
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 101, 16

Conread position: 9-410
Cow position:
Alignm length: 409
Alignm identity: 256
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 138, 13

Conread position: 10-245
Cow position:
Alignm length: 242
Alignm identity: 173
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 10, 78

Conread position: 10-363
Cow position:
Alignm length: 364
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 16

Conread position: 10-377
Cow position:
Alignm length: 370
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 42

Conread position: 10-382
Cow position:
Alignm length: 389
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 158

Conread position: 11-360
Cow position:
Alignm length: 366
Alignm identity: 249
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 92, 25

Conread position: 11-380
Cow position:
Alignm length: 388
Alignm identity: 265
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 97, 41

Conread position: 11-382
Cow position:
Alignm length: 391
Alignm identity: 269
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 79, 40

Conread position: 12-364
Cow position:
Alignm length: 362
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 42

Conread position: 12-382
Cow position:
Alignm length: 388
Alignm identity: 263
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 5, 25

Conread position: 15-381
Cow position:
Alignm length: 378
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 19

Conread position: 16-209
Cow position:
Alignm length: 198
Alignm identity: 145
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 31, 0

Conread position: 18-377
Cow position:
Alignm length: 371
Alignm identity: 257
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 95, 16

Conread position: 18-382
Cow position:
Alignm length: 377
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 16

Conread position: 18-382
Cow position:
Alignm length: 369
Alignm identity: 237
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 34, 98

Conread position: 20-278
Cow position:
Alignm length: 264
Alignm identity: 186
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 177, 17

Conread position: 20-381
Cow position:
Alignm length: 375
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 129

Conread position: 20-381
Cow position:
Alignm length: 371
Alignm identity: 258
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 178, 105

Conread position: 20-381
Cow position:
Alignm length: 374
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 78

Conread position: 20-382
Cow position:
Alignm length: 374
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 34

Conread position: 21-382
Cow position:
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 32

Conread position: 21-382
Cow position:
Alignm length: 364
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 5

Conread position: 21-382
Cow position:
Alignm length: 373
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 145

Conread position: 24-339
Cow position:
Alignm length: 327
Alignm identity: 223
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 174, 10

Conread position: 25-367
Cow position:
Alignm length: 352
Alignm identity: 243
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 180, 29

Conread position: 28-297
Cow position:
Alignm length: 280
Alignm identity: 187
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 136

Conread position: 30-382
Cow position:
Alignm length: 375
Alignm identity: 258
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 165, 26

Conread position: 30-382
Cow position:
Alignm length: 358
Alignm identity: 248
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 168, 58

Conread position: 37-370
Cow position:
Alignm length: 350
Alignm identity: 237
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 45, 144

Conread position: 37-382
Cow position:
Alignm length: 358
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 81

Conread position: 38-382
Cow position:
Alignm length: 361
Alignm identity: 247
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 82, 32

Conread position: 39-382
Cow position:
Alignm length: 354
Alignm identity: 223
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 69, 75

Conread position: 39-382
Cow position:
Alignm length: 346
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 82

Conread position: 40-377
Cow position:
Alignm length: 350
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 89

Conread position: 40-381
Cow position:
Alignm length: 353
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 126

Conread position: 40-381
Cow position:
Alignm length: 351
Alignm identity: 240
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 197, 137

Conread position: 41-349
Cow position:
Alignm length: 317
Alignm identity: 213
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 94, 89

Conread position: 41-382
Cow position:
Alignm length: 353
Alignm identity: 249
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 154, 77

Conread position: 43-257
Cow position:
Alignm length: 217
Alignm identity: 147
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 152, 111

Conread position: 43-289
Cow position:
Alignm length: 263
Alignm identity: 179
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 124

Conread position: 43-381
Cow position:
Alignm length: 349
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 106

Conread position: 57-406
Cow position:
Alignm length: 377
Alignm identity: 253
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 138, 112

Conread position: 60-382
Cow position:
Alignm length: 339
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 18

Conread position: 62-382
Cow position:
Alignm length: 333
Alignm identity: 239
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 49, 110

Conread position: 63-386
Cow position:
Alignm length: 328
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 116

Conread position: 74-367
Cow position:
Alignm length: 298
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 102

Conread position: 77-389
Cow position:
Alignm length: 321
Alignm identity: 212
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 16

Conread position: 97-381
Cow position:
Alignm length: 295
Alignm identity: 212
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 101, 80

Conread position: 98-378
Cow position:
Alignm length: 290
Alignm identity: 213
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 27, 64

Conread position: 98-381
Cow position:
Alignm length: 295
Alignm identity: 215
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 100, 79

Conread position: 98-381
Cow position:
Alignm length: 296
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 80

Conread position: 98-381
Cow position:
Alignm length: 295
Alignm identity: 215
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 100, 79

Conread position: 98-381
Cow position:
Alignm length: 296
Alignm identity: 213
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 100, 79

Conread position: 98-381
Cow position:
Alignm length: 296
Alignm identity: 210
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 100, 79

Conread position: 98-381
Cow position:
Alignm length: 295
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 79

Conread position: 98-382
Cow position:
Alignm length: 294
Alignm identity: 215
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 144, 79

Conread position: 105-373
Cow position:
Alignm length: 277
Alignm identity: 206
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 34, 8

Conread position: 106-382
Cow position:
Alignm length: 288
Alignm identity: 211
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 93, 7

Conread position: 115-370
Cow position:
Alignm length: 268
Alignm identity: 190
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 84, 34

Conread position: 116-382
Cow position:
Alignm length: 280
Alignm identity: 189
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 83, 18

Conread position: 120-367
Cow position:
Alignm length: 260
Alignm identity: 180
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 26, 32

Conread position: 136-382
Cow position:
Alignm length: 255
Alignm identity: 175
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 86, 11

Conread position: 162-382
Cow position:
Alignm length: 231
Alignm identity: 173
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 37, 216

Conread position: 166-383
Cow position:
Alignm length: 231
Alignm identity: 168
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 33, 192

Conread position: 172-390
Cow position:
Alignm length: 227
Alignm identity: 174
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 25, 193

Conread position: 174-382
Cow position:
Alignm length: 218
Alignm identity: 166
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 25, 122

Conread position: 175-383
Cow position:
Alignm length: 227
Alignm identity: 160
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 177-382
Cow position:
Alignm length: 218
Alignm identity: 168
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 22, 131

Conread position: 181-381
Cow position:
Alignm length: 212
Alignm identity: 158
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 17, 198

Conread position: 186-433
Cow position:
Alignm length: 255
Alignm identity: 171
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 57

Conread position: 224-389
Cow position:
Alignm length: 168
Alignm identity: 133
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 59, 27

Conread position: 237-381
Cow position:
Alignm length: 148
Alignm identity: 118
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 54, 6

Conread position: 246-382
Cow position:
Alignm length: 140
Alignm identity: 110
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 49, 40

Conread position: 250-362
Cow position:
Alignm length: 113
Alignm identity: 93
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 251-382
Cow position:
Alignm length: 136
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 37, 121

Conread position: 253-382
Cow position:
Alignm length: 135
Alignm identity: 106
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 29, 52

Conread position: 264-385
Cow position:
Alignm length: 129
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 22, 0

Show alignments to all cow chromosomes.