Cow genome map
| Conread name: | Ss1.1-Spl1-SPL01G040079.5 |
| Conread position: | 1-357 |
| Cow position: | chr4:16360642-16361008 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 49 |
| Conread position: | 1-359 |
| Cow position: | chr4:69521283-69521627 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 198, 49 |
| Conread position: | 1-371 |
| Cow position: | chr4:34178512-34178128 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 35 |
| Conread position: | 1-381 |
| Cow position: | chr4:6489636-6489246 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 49 |
| Conread position: | 1-381 |
| Cow position: | chr4:33072093-33071714 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 53 |
| Conread position: | 1-381 |
| Cow position: | chr4:36897100-36897487 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 33 |
| Conread position: | 1-381 |
| Cow position: | chr4:44726321-44726696 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 194, 33 |
| Conread position: | 1-382 |
| Cow position: | chr4:10882274-10882661 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 35 |
| Conread position: | 1-382 |
| Cow position: | chr4:26877055-26876670 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-382 |
| Cow position: | chr4:31564582-31564176 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 73 |
| Conread position: | 1-382 |
| Cow position: | chr4:43318915-43318528 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 53 |
| Conread position: | 1-382 |
| Cow position: | chr4:43881833-43882217 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 34 |
| Conread position: | 1-382 |
| Cow position: | chr4:51042563-51042178 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 53 |
| Conread position: | 1-382 |
| Cow position: | chr4:60263439-60263050 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 56 |
| Conread position: | 1-382 |
| Cow position: | chr4:67681919-67682304 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 34 |
| Conread position: | 1-383 |
| Cow position: | chr4:17925237-17924853 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 53 |
| Conread position: | 1-389 |
| Cow position: | chr4:356636-357022 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 54 |
| Conread position: | 3-258 |
| Cow position: | chr4:16057406-16057662 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 193, 34 |
| Conread position: | 3-302 |
| Cow position: | chr4:27334442-27334741 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 234, 33 |
| Conread position: | 3-372 |
| Cow position: | chr4:159887-160258 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 174 |
| Conread position: | 3-380 |
| Cow position: | chr4:5880882-5881269 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 31 |
| Conread position: | 3-381 |
| Cow position: | chr4:17093137-17092756 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 31 |
| Conread position: | 3-381 |
| Cow position: | chr4:18337592-18337960 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 195, 33 |
| Conread position: | 3-381 |
| Cow position: | chr4:18423796-18423410 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-381 |
| Cow position: | chr4:41955482-41955869 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 166 |
| Conread position: | 3-381 |
| Cow position: | chr4:45106187-45106572 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 33 |
| Conread position: | 3-382 |
| Cow position: | chr4:1929914-1929528 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 33 |
| Conread position: | 3-384 |
| Cow position: | chr4:530128-530514 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 164 |
| Conread position: | 3-389 |
| Cow position: | chr4:44780496-44780106 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 30 |
| Conread position: | 6-381 |
| Cow position: | chr4:5444104-5443719 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 160 |
| Conread position: | 6-382 |
| Cow position: | chr4:1049532-1049149 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 155 |
| Conread position: | 6-382 |
| Cow position: | chr4:12588062-12588439 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 29 |
| Conread position: | 6-437 |
| Cow position: | chr4:30471961-30472408 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 297 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 108, 30 |
| Conread position: | 9-233 |
| Cow position: | chr4:4439065-4439285 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 185, 7 |
| Conread position: | 9-320 |
| Cow position: | chr4:20181773-20182080 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 81, 16 |
| Conread position: | 9-369 |
| Cow position: | chr4:45298350-45298001 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 190, 86 |
| Conread position: | 9-380 |
| Cow position: | chr4:967345-966964 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 261 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 143, 45 |
| Conread position: | 9-381 |
| Cow position: | chr4:13870744-13871089 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 186, 46 |
| Conread position: | 9-381 |
| Cow position: | chr4:32212905-32213275 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 28, 65 |
| Conread position: | 9-381 |
| Cow position: | chr4:50975368-50975736 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 109 |
| Conread position: | 9-382 |
| Cow position: | chr4:16639346-16639723 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 45 |
| Conread position: | 9-382 |
| Cow position: | chr4:22474084-22474458 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 16 |
| Conread position: | 9-382 |
| Cow position: | chr4:25598764-25598378 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 45 |
| Conread position: | 10-367 |
| Cow position: | chr4:5926109-5925752 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 25, 126 |
| Conread position: | 11-381 |
| Cow position: | chr4:99482-99112 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 12-287 |
| Cow position: | chr4:49716409-49716687 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 5, 42 |
| Conread position: | 12-382 |
| Cow position: | chr4:44924790-44924425 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 13 |
| Conread position: | 12-382 |
| Cow position: | chr4:50981214-50981593 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 5, 57 |
| Conread position: | 12-384 |
| Cow position: | chr4:2089129-2089505 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 39, 99 |
| Conread position: | 16-382 |
| Cow position: | chr4:13494067-13494437 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 151 |
| Conread position: | 17-411 |
| Cow position: | chr4:14820125-14819730 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 17, 133 |
| Conread position: | 18-380 |
| Cow position: | chr4:3126543-3126915 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 149 |
| Conread position: | 18-382 |
| Cow position: | chr4:12240476-12240107 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 16 |
| Conread position: | 18-382 |
| Cow position: | chr4:57984726-57985099 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 149 |
| Conread position: | 23-382 |
| Cow position: | chr4:9847468-9847101 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 88 |
| Conread position: | 24-382 |
| Cow position: | chr4:6206353-6206710 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 146, 13 |
| Conread position: | 28-361 |
| Cow position: | chr4:14755903-14755573 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 249 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 196, 23 |
| Conread position: | 28-370 |
| Cow position: | chr4:54969480-54969829 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 31-406 |
| Cow position: | chr4:27300729-27300351 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 259 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 168, 75 |
| Conread position: | 33-382 |
| Cow position: | chr4:68110278-68109920 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 86, 145 |
| Conread position: | 37-382 |
| Cow position: | chr4:28832332-28832654 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 51 |
| Conread position: | 38-370 |
| Cow position: | chr4:46665286-46665634 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 108, 80 |
| Conread position: | 38-377 |
| Cow position: | chr4:20604490-20604813 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 157, 40 |
| Conread position: | 38-382 |
| Cow position: | chr4:4416820-4417168 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 44-382 |
| Cow position: | chr4:4178035-4178359 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 150, 47 |
| Conread position: | 48-383 |
| Cow position: | chr4:22841491-22841168 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 29 |
| Conread position: | 49-334 |
| Cow position: | chr4:603786-604080 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 147, 78 |
| Conread position: | 62-378 |
| Cow position: | chr4:65915817-65916137 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 63-345 |
| Cow position: | chr4:41333473-41333761 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 7, 95 |
| Conread position: | 63-382 |
| Cow position: | chr4:19005526-19005206 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 28 |
| Conread position: | 63-382 |
| Cow position: | chr4:42405390-42405719 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 79-382 |
| Cow position: | chr4:11110478-11110170 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 80 |
| Conread position: | 95-285 |
| Cow position: | chr4:48027635-48027831 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 100, 40 |
| Conread position: | 100-381 |
| Cow position: | chr4:41959718-41960006 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 96, 68 |
| Conread position: | 101-373 |
| Cow position: | chr4:34183801-34183534 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 9, 50 |
| Conread position: | 101-382 |
| Cow position: | chr4:6567209-6567491 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 97, 76 |
| Conread position: | 107-382 |
| Cow position: | chr4:6615298-6615013 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 117-371 |
| Cow position: | chr4:47253498-47253239 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 78, 49 |
| Conread position: | 121-382 |
| Cow position: | chr4:9647220-9647478 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 77, 10 |
| Conread position: | 137-382 |
| Cow position: | chr4:41191744-41191491 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 62, 38 |
| Conread position: | 142-368 |
| Cow position: | chr4:57957860-57958081 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 58, 33 |
| Conread position: | 177-382 |
| Cow position: | chr4:41428207-41428420 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 19, 190 |
| Conread position: | 195-381 |
| Cow position: | chr4:9355295-9355488 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 67, 181 |
| Conread position: | 223-384 |
| Cow position: | chr4:14138986-14139150 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 102 |
| Conread position: | 256-381 |
| Cow position: | chr4:65665415-65665288 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 32, 115 |
Show alignments to all cow chromosomes.