Cow genome map

Conread name: Ss1.1-Spl1-SPL01G040079.5

Conread position: 1-345
Cow position: chrX:26757816-26757468 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 53

Conread position: 1-354
Cow position: chrX:21059580-21059931 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 254
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 198, 142

Conread position: 1-360
Cow position: chrX:29852766-29852399 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 50

Conread position: 1-370
Cow position: chrX:30183138-30182755 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 34

Conread position: 1-381
Cow position: chrX:2481831-2481447 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 32

Conread position: 1-381
Cow position: chrX:12668950-12668564 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 21

Conread position: 1-381
Cow position: chrX:36136763-36136382 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 176

Conread position: 1-382
Cow position: chrX:8610906-8610519 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 57

Conread position: 1-382
Cow position: chrX:12314957-12314574 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 50

Conread position: 1-382
Cow position: chrX:13412333-13411948 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 33

Conread position: 1-382
Cow position: chrX:15126437-15126042 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 172

Conread position: 1-382
Cow position: chrX:17666986-17666609 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 32

Conread position: 1-382
Cow position: chrX:21580264-21580669 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 281
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 194, 53

Conread position: 1-382
Cow position: chrX:23040324-23039942 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 32

Conread position: 1-382
Cow position: chrX:23389718-23389334 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 53

Conread position: 1-382
Cow position: chrX:23455218-23454834 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 53

Conread position: 1-382
Cow position: chrX:27593191-27592802 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 175

Conread position: 1-382
Cow position: chrX:27987026-27986644 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 33

Conread position: 1-382
Cow position: chrX:28554409-28554818 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 275
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 117, 34

Conread position: 1-382
Cow position: chrX:29286229-29286615 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 166

Conread position: 1-382
Cow position: chrX:30057851-30058236 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 261
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 191, 50

Conread position: 1-382
Cow position: chrX:30231298-30230914 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 53

Conread position: 1-384
Cow position: chrX:5296750-5296369 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 141

Conread position: 1-384
Cow position: chrX:23277825-23278207 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 53

Conread position: 1-384
Cow position: chrX:34219107-34219488 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 51

Conread position: 2-357
Cow position: chrX:12653726-12653363 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 164

Conread position: 2-381
Cow position: chrX:15309130-15308749 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 253
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 192, 15

Conread position: 2-381
Cow position: chrX:16362324-16361937 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 50

Conread position: 2-385
Cow position: chrX:18553229-18553615 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 261
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 194, 52

Conread position: 3-248
Cow position: chrX:2102986-2103230 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 193, 30

Conread position: 3-273
Cow position: chrX:979396-979671 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 191
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 193, 33

Conread position: 3-326
Cow position: chrX:15590781-15591112 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 167

Conread position: 3-349
Cow position: chrX:22618497-22618155 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 250
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 192, 54

Conread position: 3-355
Cow position: chrX:9126161-9126521 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 33

Conread position: 3-363
Cow position: chrX:18658990-18658636 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 249
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 195, 51

Conread position: 3-372
Cow position: chrX:12287603-12287226 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 51

Conread position: 3-377
Cow position: chrX:13075896-13075516 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 33

Conread position: 3-377
Cow position: chrX:13096471-13096079 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 270
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 126, 33

Conread position: 3-377
Cow position: chrX:14460324-14460705 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 33

Conread position: 3-377
Cow position: chrX:29172962-29172581 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 33

Conread position: 3-380
Cow position: chrX:28585780-28586164 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 51

Conread position: 3-381
Cow position: chrX:674404-674020 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 93

Conread position: 3-381
Cow position: chrX:983463-983849 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 33

Conread position: 3-381
Cow position: chrX:2577222-2577608 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 176

Conread position: 3-381
Cow position: chrX:2858574-2858193 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 33

Conread position: 3-381
Cow position: chrX:3467835-3467461 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 31

Conread position: 3-381
Cow position: chrX:5322926-5322544 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 275
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 102, 33

Conread position: 3-381
Cow position: chrX:5864195-5864579 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 33

Conread position: 3-381
Cow position: chrX:6872272-6871890 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 163

Conread position: 3-381
Cow position: chrX:7031264-7031648 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 46

Conread position: 3-381
Cow position: chrX:7482434-7482817 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 33

Conread position: 3-381
Cow position: chrX:8962775-8962389 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 374

Conread position: 3-381
Cow position: chrX:11148534-11148151 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 31

Conread position: 3-381
Cow position: chrX:11422671-11423054 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 33

Conread position: 3-381
Cow position: chrX:12343736-12344121 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 31

Conread position: 3-381
Cow position: chrX:13397418-13397034 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 33

Conread position: 3-381
Cow position: chrX:14784663-14784289 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 30

Conread position: 3-381
Cow position: chrX:15623697-15623317 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 30

Conread position: 3-381
Cow position: chrX:15980158-15979774 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 31

Conread position: 3-381
Cow position: chrX:16811642-16811262 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 31

Conread position: 3-381
Cow position: chrX:17477624-17477239 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 33

Conread position: 3-381
Cow position: chrX:27425525-27425139 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 33

Conread position: 3-381
Cow position: chrX:29935397-29935782 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 33

Conread position: 3-381
Cow position: chrX:30201931-30201554 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 262
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 195, 33

Conread position: 3-381
Cow position: chrX:32066364-32065984 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 33

Conread position: 3-381
Cow position: chrX:37812963-37813335 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 86

Conread position: 3-382
Cow position: chrX:1834620-1834999 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 30

Conread position: 3-382
Cow position: chrX:8588964-8589347 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 31

Conread position: 3-382
Cow position: chrX:14595648-14596031 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 93

Conread position: 3-382
Cow position: chrX:16276447-16276834 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 33

Conread position: 3-382
Cow position: chrX:28561088-28560711 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 33

Conread position: 3-382
Cow position: chrX:29910624-29910244 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 30

Conread position: 3-382
Cow position: chrX:30171031-30170654 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 256
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 127, 30

Conread position: 3-382
Cow position: chrX:39563135-39562765 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 81

Conread position: 3-384
Cow position: chrX:35530664-35531041 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 31

Conread position: 3-389
Cow position: chrX:16463515-16463125 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 20

Conread position: 5-381
Cow position: chrX:27961658-27962038 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 50

Conread position: 6-381
Cow position: chrX:7752704-7753091 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 270
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 192, 30

Conread position: 6-382
Cow position: chrX:1547777-1548164 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 156

Conread position: 6-382
Cow position: chrX:29096999-29097383 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 48

Conread position: 6-382
Cow position: chrX:30138776-30138390 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 161

Conread position: 6-382
Cow position: chrX:38148394-38148782 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 163

Conread position: 6-420
Cow position: chrX:4797128-4797531 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 297
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 272, 48

Conread position: 7-382
Cow position: chrX:37014927-37015308 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 29

Conread position: 8-334
Cow position: chrX:23132772-23133104 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 28

Conread position: 9-193
Cow position: chrX:5304962-5305143 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 130
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 101, 24

Conread position: 9-301
Cow position: chrX:16041389-16041082 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 211
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 100, 25

Conread position: 9-340
Cow position: chrX:13182319-13181990 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 230
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 186, 16

Conread position: 9-351
Cow position: chrX:26426761-26426426 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 241
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 190, 16

Conread position: 9-370
Cow position: chrX:29944582-29944927 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 239
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 189, 45

Conread position: 9-371
Cow position: chrX:21830335-21830703 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 25

Conread position: 9-372
Cow position: chrX:41102659-41102301 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 248
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 142, 41

Conread position: 9-377
Cow position: chrX:8480456-8480833 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 28

Conread position: 9-381
Cow position: chrX:12702897-12702520 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 27

Conread position: 9-381
Cow position: chrX:24324767-24324381 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 27

Conread position: 9-381
Cow position: chrX:29778702-29778327 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 251
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 187, 16

Conread position: 9-381
Cow position: chrX:30011805-30012182 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 264
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 187, 27

Conread position: 9-382
Cow position: chrX:13053814-13054198 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 276
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 104, 42

Conread position: 9-382
Cow position: chrX:18952874-18952493 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 24

Conread position: 9-382
Cow position: chrX:26528782-26529152 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 45

Conread position: 9-382
Cow position: chrX:28650746-28650365 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 41

Conread position: 9-382
Cow position: chrX:29793227-29792847 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 127

Conread position: 9-382
Cow position: chrX:29885793-29886176 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 167

Conread position: 9-384
Cow position: chrX:29949797-29949411 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 169

Conread position: 9-391
Cow position: chrX:10416651-10416260 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 266
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 12, 71

Conread position: 9-413
Cow position: chrX:24476393-24475955 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 289
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 11, 168

Conread position: 9-441
Cow position: chrX:18535257-18535695 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 286
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 94, 27

Conread position: 10-245
Cow position: chrX:16015615-16015380 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 107, 27

Conread position: 10-370
Cow position: chrX:27993659-27993290 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 247
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 185, 16

Conread position: 10-382
Cow position: chrX:9093380-9093762 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 119

Conread position: 10-382
Cow position: chrX:27316083-27316462 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 44

Conread position: 10-382
Cow position: chrX:45377298-45376908 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 269
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 69, 24

Conread position: 11-382
Cow position: chrX:10385114-10385483 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 255
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 187, 43

Conread position: 11-382
Cow position: chrX:26999393-26999754 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 260
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 91, 41

Conread position: 11-382
Cow position: chrX:44388571-44388944 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 43

Conread position: 12-290
Cow position: chrX:16700125-16700409 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 112, 155

Conread position: 13-382
Cow position: chrX:20798130-20798495 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 254
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 76, 12

Conread position: 13-382
Cow position: chrX:23418217-23417833 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 241
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 169

Conread position: 16-382
Cow position: chrX:31199373-31199747 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 151

Conread position: 17-321
Cow position: chrX:2011893-2011594 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 208
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 153

Conread position: 17-382
Cow position: chrX:4752815-4752442 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 250
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 32, 150

Conread position: 17-382
Cow position: chrX:21589804-21590172 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 159

Conread position: 18-199
Cow position: chrX:31186404-31186223 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 97

Conread position: 18-381
Cow position: chrX:7094228-7094587 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 261
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 180, 70

Conread position: 18-381
Cow position: chrX:9009153-9009521 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 86

Conread position: 20-344
Cow position: chrX:5394190-5393856 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 235
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 176, 139

Conread position: 20-381
Cow position: chrX:8574674-8574312 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 250
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 60, 42

Conread position: 20-382
Cow position: chrX:17052360-17052729 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 14

Conread position: 20-382
Cow position: chrX:28626812-28626446 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 146

Conread position: 23-381
Cow position: chrX:27619315-27618948 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 143

Conread position: 23-382
Cow position: chrX:21269235-21268865 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 267
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 166, 33

Conread position: 23-383
Cow position: chrX:971603-971957 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 31

Conread position: 23-389
Cow position: chrX:22816678-22817029 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 252
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 259, 152

Conread position: 24-351
Cow position: chrX:15486942-15486617 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 86

Conread position: 25-359
Cow position: chrX:19875336-19875677 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 238
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 143, 12

Conread position: 26-353
Cow position: chrX:30365962-30365635 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 28

Conread position: 29-416
Cow position: chrX:41888171-41887758 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 273
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 212, 142

Conread position: 30-381
Cow position: chrX:5335660-5335297 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 136

Conread position: 31-382
Cow position: chrX:26766374-26766015 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 77

Conread position: 37-373
Cow position: chrX:22488975-22489308 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 233
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 81, 123

Conread position: 39-381
Cow position: chrX:32559514-32559165 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 224
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 143, 35

Conread position: 39-382
Cow position: chrX:18242004-18242340 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 234
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 75, 39

Conread position: 40-357
Cow position: chrX:2562024-2561697 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 228
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 156, 126

Conread position: 40-381
Cow position: chrX:3375071-3374725 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 56

Conread position: 40-381
Cow position: chrX:12354071-12354420 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 78

Conread position: 41-360
Cow position: chrX:24134417-24134095 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 154, 44

Conread position: 41-382
Cow position: chrX:28868408-28868057 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 246
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 158, 47

Conread position: 41-382
Cow position: chrX:30069009-30068665 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 76

Conread position: 45-381
Cow position: chrX:41850362-41850029 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 32

Conread position: 47-325
Cow position: chrX:48368204-48367914 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 197
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 42, 85

Conread position: 48-390
Cow position: chrX:4411492-4411842 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 236
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 151, 45

Conread position: 51-341
Cow position: chrX:5372187-5371899 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 193
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 68, 52

Conread position: 64-382
Cow position: chrX:18220282-18220612 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 235
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 134, 113

Conread position: 78-382
Cow position: chrX:12480866-12481182 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 219
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 24, 98

Conread position: 91-381
Cow position: chrX:2815595-2815299 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 86

Conread position: 95-382
Cow position: chrX:15600051-15600338 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 210
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 104, 70

Conread position: 98-303
Cow position: chrX:37849884-37850097 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 98, 30

Conread position: 98-380
Cow position: chrX:15178543-15178252 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 208
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 98, 79

Conread position: 98-381
Cow position: chrX:3084244-3083954 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 100, 79

Conread position: 98-381
Cow position: chrX:3420318-3420027 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 79

Conread position: 98-381
Cow position: chrX:5282887-5282596 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 100, 70

Conread position: 98-382
Cow position: chrX:26578567-26578852 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 198
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 96, 28

Conread position: 99-381
Cow position: chrX:31053790-31053514 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 194
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 100, 32

Conread position: 104-370
Cow position: chrX:6014051-6013786 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 198
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 95, 71

Conread position: 116-382
Cow position: chrX:46235654-46235930 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 204
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 83, 59

Conread position: 118-350
Cow position: chrX:28521682-28521443 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 81, 59

Conread position: 118-382
Cow position: chrX:35025966-35026230 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 186
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 81, 37

Conread position: 129-382
Cow position: chrX:18451903-18452165 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 69, 48

Conread position: 131-382
Cow position: chrX:27083893-27084152 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 193
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 67, 46

Conread position: 138-372
Cow position: chrX:2535136-2534895 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 56, 39

Conread position: 150-382
Cow position: chrX:21643960-21643718 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 185
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 48, 27

Conread position: 162-382
Cow position: chrX:3621259-3621492 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 220

Conread position: 162-382
Cow position: chrX:5356867-5356640 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 33, 213

Conread position: 166-382
Cow position: chrX:24771903-24771677 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 174
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 32, 213

Conread position: 177-389
Cow position: chrX:20695850-20695634 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 25, 185

Conread position: 184-382
Cow position: chrX:505205-505008 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 17, 36

Conread position: 196-381
Cow position: chrX:13447835-13447642 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 46, 181

Conread position: 197-381
Cow position: chrX:20035409-20035217 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 45, 180

Conread position: 197-381
Cow position: chrX:26399135-26398943 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 37, 180

Conread position: 200-372
Cow position: chrX:16684841-16684660 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 225-382
Cow position: chrX:39694672-39694832 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 20, 39

Conread position: 235-381
Cow position: chrX:28506233-28506086 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 75

Conread position: 238-381
Cow position: chrX:28757606-28757461 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 50, 133

Conread position: 250-382
Cow position: chrX:21753376-21753249 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 255-382
Cow position: chrX:15144850-15144724 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 105
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 113, 0

Conread position: 274-370
Cow position: chrX:36251238-36251142 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 80
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 277-384
Cow position: chrX:12284022-12284126 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 25, 0

Show alignments to all cow chromosomes.