Cow genome map


           Conread name:
           Ss1.1-Tes1-TES01E110039.5.5
        

               Conread position:
               1-139
               

               Cow position:
               chr5:71405905-71405767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               141-532
               

               Cow position:
               chr5:71394189-71393798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               526-617
               

               Cow position:
               chr5:71393051-71392960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               92
               

               Alignm identity:
               89
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               615-711
               

               Cow position:
               chr5:71391993-71391894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               100
               

               Alignm identity:
               87
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               710-890
               

               Cow position:
               chr5:71390065-71389885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               167
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               889-969
               

               Cow position:
               chr5:71389299-71389219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               81
               

               Alignm identity:
               78
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               969-1125
               

               Cow position:
               chr5:71387715-71387560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               135
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               1098-1165
               

               Cow position:
               chr5:71386514-71386447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               68
               

               Alignm identity:
               67
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.