Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 245-380 |
| Cow position: | chr10:23689811-23689675 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 79 |
| Conread position: | 370-883 |
| Cow position: | chr10:39780272-39780787 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 371-865 |
| Cow position: | chr10:61296875-61296375 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 92 |
| Conread position: | 374-534 |
| Cow position: | chr10:14951299-14951143 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 374-649 |
| Cow position: | chr10:276191-275913 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 9, 165 |
| Conread position: | 374-651 |
| Cow position: | chr10:29695819-29695555 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 374-651 |
| Cow position: | chr10:40425269-40424985 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 381-539 |
| Cow position: | chr10:14886273-14886427 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 382-534 |
| Cow position: | chr10:60489228-60489074 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 58, 126 |
| Conread position: | 382-599 |
| Cow position: | chr10:1375104-1374882 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 132, 30 |
| Conread position: | 382-638 |
| Cow position: | chr10:31523433-31523171 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 382-647 |
| Cow position: | chr10:29633262-29633516 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 195 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 382-651 |
| Cow position: | chr10:34685476-34685207 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 212, 154 |
| Conread position: | 382-1019 |
| Cow position: | chr10:42628037-42627401 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 187 |
| Conread position: | 382-1020 |
| Cow position: | chr10:54127030-54126390 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 161 |
| Conread position: | 384-520 |
| Cow position: | chr10:24299288-24299421 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 384-539 |
| Cow position: | chr10:15862706-15862861 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-562 |
| Cow position: | chr10:25358921-25358737 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 116, 110 |
| Conread position: | 384-573 |
| Cow position: | chr10:281088-281277 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 187, 123 |
| Conread position: | 384-631 |
| Cow position: | chr10:37769391-37769147 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 116, 110 |
| Conread position: | 384-632 |
| Cow position: | chr10:23458440-23458696 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 128, 221 |
| Conread position: | 384-632 |
| Cow position: | chr10:32650306-32650057 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 128, 215 |
| Conread position: | 384-632 |
| Cow position: | chr10:37060495-37060242 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 128, 219 |
| Conread position: | 384-634 |
| Cow position: | chr10:2123831-2124084 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 128, 193 |
| Conread position: | 384-634 |
| Cow position: | chr10:22100808-22100552 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 128, 219 |
| Conread position: | 384-634 |
| Cow position: | chr10:37040655-37040402 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 92, 74 |
| Conread position: | 384-635 |
| Cow position: | chr10:21466787-21466532 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-649 |
| Cow position: | chr10:62777920-62777657 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 384-651 |
| Cow position: | chr10:25497930-25497665 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 62, 153 |
| Conread position: | 384-786 |
| Cow position: | chr10:4192681-4193085 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 379 |
| Conread position: | 384-786 |
| Cow position: | chr10:32654298-32653894 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 189, 209 |
| Conread position: | 384-786 |
| Cow position: | chr10:41876455-41876051 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 110 |
| Conread position: | 384-809 |
| Cow position: | chr10:25565728-25566153 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 37 |
| Conread position: | 384-844 |
| Cow position: | chr10:19497381-19497842 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 374 |
| Conread position: | 384-847 |
| Cow position: | chr10:47906314-47905864 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 384-847 |
| Cow position: | chr10:51953070-51953535 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 436 |
| Conread position: | 384-850 |
| Cow position: | chr10:11686123-11686586 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 149 |
| Conread position: | 384-850 |
| Cow position: | chr10:21741217-21741682 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 299 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 205, 346 |
| Conread position: | 384-850 |
| Cow position: | chr10:39179325-39178858 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 256 |
| Conread position: | 384-850 |
| Cow position: | chr10:39817811-39818275 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 152 |
| Conread position: | 384-850 |
| Cow position: | chr10:41156988-41156521 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 376 |
| Conread position: | 384-850 |
| Cow position: | chr10:41566640-41566177 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 114 |
| Conread position: | 384-850 |
| Cow position: | chr10:55092646-55092180 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 128 |
| Conread position: | 384-850 |
| Cow position: | chr10:57560015-57560482 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 298 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 215, 208 |
| Conread position: | 384-851 |
| Cow position: | chr10:28641021-28640552 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 301 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 386-850 |
| Cow position: | chr10:14803368-14802908 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 102 |
| Conread position: | 386-850 |
| Cow position: | chr10:19839705-19839240 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 296 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 203, 372 |
| Conread position: | 386-850 |
| Cow position: | chr10:21401135-21401599 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 288 |
| Conread position: | 386-1022 |
| Cow position: | chr10:38546658-38547308 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 256 |
| Conread position: | 387-599 |
| Cow position: | chr10:39041744-39041964 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 125, 6 |
| Conread position: | 389-562 |
| Cow position: | chr10:19143779-19143956 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 122, 150 |
| Conread position: | 389-634 |
| Cow position: | chr10:7283119-7283363 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 144, 208 |
| Conread position: | 389-652 |
| Cow position: | chr10:1048016-1048291 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 53, 220 |
| Conread position: | 390-534 |
| Cow position: | chr10:62216175-62216030 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 392-631 |
| Cow position: | chr10:10581213-10580969 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 120, 170 |
| Conread position: | 393-599 |
| Cow position: | chr10:38345817-38346028 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 119, 164 |
| Conread position: | 393-634 |
| Cow position: | chr10:29847061-29847304 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 119, 207 |
| Conread position: | 397-652 |
| Cow position: | chr10:21486471-21486214 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 115, 203 |
| Conread position: | 404-632 |
| Cow position: | chr10:19716057-19716288 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 108, 197 |
| Conread position: | 405-651 |
| Cow position: | chr10:41144769-41145012 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 6, 65 |
| Conread position: | 410-1017 |
| Cow position: | chr10:42736065-42735445 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 326 |
| Conread position: | 731-852 |
| Cow position: | chr10:24300382-24300502 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 739-1022 |
| Cow position: | chr10:26596764-26596469 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 113, 17 |
Show alignments to all cow chromosomes.