Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 371-520 |
| Cow position: | chr11:9158197-9158346 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 131, 99 |
| Conread position: | 371-594 |
| Cow position: | chr11:28062894-28062664 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 371-651 |
| Cow position: | chr11:75132744-75132473 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 371-810 |
| Cow position: | chr11:31925360-31924923 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 296 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 123, 7 |
| Conread position: | 372-538 |
| Cow position: | chr11:65162313-65162479 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 97, 12 |
| Conread position: | 372-538 |
| Cow position: | chr11:81853375-81853541 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 372-651 |
| Cow position: | chr11:44496371-44496646 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 234, 8 |
| Conread position: | 375-648 |
| Cow position: | chr11:30304493-30304225 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 375-850 |
| Cow position: | chr11:7122125-7122601 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 385 |
| Conread position: | 382-521 |
| Cow position: | chr11:12092961-12092822 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-522 |
| Cow position: | chr11:12352081-12352221 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-604 |
| Cow position: | chr11:9220816-9221029 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 382-632 |
| Cow position: | chr11:8887936-8888185 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 192, 154 |
| Conread position: | 382-648 |
| Cow position: | chr11:21466312-21466048 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 233, 77 |
| Conread position: | 382-649 |
| Cow position: | chr11:34020123-34019861 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 382-649 |
| Cow position: | chr11:37492418-37492682 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 46, 155 |
| Conread position: | 382-651 |
| Cow position: | chr11:9660176-9660436 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 382-865 |
| Cow position: | chr11:76375262-76375752 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 382-1029 |
| Cow position: | chr11:7112653-7112027 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 103 |
| Conread position: | 383-543 |
| Cow position: | chr11:56179120-56178969 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 383-562 |
| Cow position: | chr11:12359215-12359396 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 117, 109 |
| Conread position: | 383-698 |
| Cow position: | chr11:52462276-52461975 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 45, 180 |
| Conread position: | 383-850 |
| Cow position: | chr11:67449666-67449199 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 261 |
| Conread position: | 383-852 |
| Cow position: | chr11:40779443-40779909 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 6 |
| Conread position: | 384-520 |
| Cow position: | chr11:75919760-75919624 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-532 |
| Cow position: | chr11:7306328-7306481 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 9 |
| Conread position: | 384-562 |
| Cow position: | chr11:10846654-10846471 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 127, 38 |
| Conread position: | 384-562 |
| Cow position: | chr11:24392530-24392350 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 384-562 |
| Cow position: | chr11:72110756-72110940 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 116, 102 |
| Conread position: | 384-586 |
| Cow position: | chr11:8262499-8262698 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 384-586 |
| Cow position: | chr11:85394606-85394810 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 116, 110 |
| Conread position: | 384-604 |
| Cow position: | chr11:25526805-25526592 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 85, 154 |
| Conread position: | 384-629 |
| Cow position: | chr11:37093859-37094102 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 384-631 |
| Cow position: | chr11:44158256-44158507 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 128, 219 |
| Conread position: | 384-632 |
| Cow position: | chr11:4271633-4271881 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 128, 213 |
| Conread position: | 384-632 |
| Cow position: | chr11:23876507-23876255 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 127, 217 |
| Conread position: | 384-632 |
| Cow position: | chr11:29669423-29669674 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 127, 114 |
| Conread position: | 384-632 |
| Cow position: | chr11:53432566-53432811 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 384-632 |
| Cow position: | chr11:71328849-71328600 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 116, 110 |
| Conread position: | 384-634 |
| Cow position: | chr11:19103283-19103538 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 136, 219 |
| Conread position: | 384-651 |
| Cow position: | chr11:66725521-66725256 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 87, 10 |
| Conread position: | 384-690 |
| Cow position: | chr11:55497632-55497322 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-721 |
| Cow position: | chr11:4041889-4042232 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 262 |
| Conread position: | 384-735 |
| Cow position: | chr11:54208820-54208469 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 10 |
| Conread position: | 384-809 |
| Cow position: | chr11:37477945-37478372 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 376 |
| Conread position: | 384-809 |
| Cow position: | chr11:63661374-63661796 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 69 |
| Conread position: | 384-809 |
| Cow position: | chr11:67847395-67847822 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 376 |
| Conread position: | 384-847 |
| Cow position: | chr11:39799103-39799568 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-847 |
| Cow position: | chr11:52418568-52418105 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 376 |
| Conread position: | 384-850 |
| Cow position: | chr11:3492185-3491718 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 376 |
| Conread position: | 384-850 |
| Cow position: | chr11:17108495-17108962 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 374 |
| Conread position: | 384-850 |
| Cow position: | chr11:19065086-19065553 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 31 |
| Conread position: | 384-850 |
| Cow position: | chr11:20921576-20922043 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 298 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 133, 110 |
| Conread position: | 384-850 |
| Cow position: | chr11:28230572-28231037 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 317 |
| Conread position: | 384-850 |
| Cow position: | chr11:32450039-32449574 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 215, 138 |
| Conread position: | 384-850 |
| Cow position: | chr11:33195720-33196184 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 73 |
| Conread position: | 384-850 |
| Cow position: | chr11:36745007-36745475 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 308 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-850 |
| Cow position: | chr11:52530208-52529747 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-850 |
| Cow position: | chr11:57628871-57629336 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 70 |
| Conread position: | 384-851 |
| Cow position: | chr11:45110307-45109845 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 149 |
| Conread position: | 384-1017 |
| Cow position: | chr11:24677265-24676622 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 83 |
| Conread position: | 385-850 |
| Cow position: | chr11:53288272-53288732 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 67 |
| Conread position: | 386-550 |
| Cow position: | chr11:7073403-7073565 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 386-644 |
| Cow position: | chr11:30126090-30126352 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 124 |
| Conread position: | 386-651 |
| Cow position: | chr11:15998114-15997850 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 386-850 |
| Cow position: | chr11:9736777-9737227 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 302 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 203, 254 |
| Conread position: | 389-631 |
| Cow position: | chr11:28055395-28055631 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 131, 74 |
| Conread position: | 389-698 |
| Cow position: | chr11:8243902-8243589 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 111, 38 |
| Conread position: | 389-720 |
| Cow position: | chr11:77729327-77729663 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 137, 97 |
| Conread position: | 389-850 |
| Cow position: | chr11:15982811-15982351 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 237 |
| Conread position: | 392-631 |
| Cow position: | chr11:43515458-43515706 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 94, 215 |
| Conread position: | 396-632 |
| Cow position: | chr11:58133547-58133310 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 116, 203 |
| Conread position: | 396-712 |
| Cow position: | chr11:10210774-10211088 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 39, 89 |
| Conread position: | 400-634 |
| Cow position: | chr11:26125744-26125979 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 112, 201 |
| Conread position: | 530-955 |
| Cow position: | chr11:7393821-7393396 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 45 |
| Conread position: | 554-864 |
| Cow position: | chr11:7686340-7686030 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 568-861 |
| Cow position: | chr11:77730587-77730883 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 192 |
Show alignments to all cow chromosomes.