Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 371-492 |
| Cow position: | chr12:2317-2197 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 371-604 |
| Cow position: | chr12:21197329-21197098 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 372-544 |
| Cow position: | chr12:48404275-48404103 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 91, 12 |
| Conread position: | 382-543 |
| Cow position: | chr12:1867964-1867802 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 382-605 |
| Cow position: | chr12:2282028-2281807 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 111 |
| Conread position: | 382-645 |
| Cow position: | chr12:26947754-26948016 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 382-647 |
| Cow position: | chr12:8310541-8310276 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 222 |
| Conread position: | 382-651 |
| Cow position: | chr12:22332120-22331849 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 41, 163 |
| Conread position: | 382-651 |
| Cow position: | chr12:26795674-26795410 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 41, 158 |
| Conread position: | 382-652 |
| Cow position: | chr12:45261144-45260878 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 224, 72 |
| Conread position: | 382-691 |
| Cow position: | chr12:15954194-15954498 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 15 |
| Conread position: | 382-830 |
| Cow position: | chr12:22121215-22120769 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 186 |
| Conread position: | 384-562 |
| Cow position: | chr12:28766609-28766788 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 128, 153 |
| Conread position: | 384-632 |
| Cow position: | chr12:1401984-1401733 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 128, 207 |
| Conread position: | 384-632 |
| Cow position: | chr12:22206250-22206493 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 384-634 |
| Cow position: | chr12:42860325-42860572 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 124, 114 |
| Conread position: | 384-651 |
| Cow position: | chr12:21901470-21901214 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 384-652 |
| Cow position: | chr12:6407152-6407421 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 128, 215 |
| Conread position: | 384-667 |
| Cow position: | chr12:20998638-20998922 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 176, 69 |
| Conread position: | 384-690 |
| Cow position: | chr12:7425108-7424798 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-690 |
| Cow position: | chr12:26141270-26140960 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-697 |
| Cow position: | chr12:21883481-21883163 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 110, 129 |
| Conread position: | 384-847 |
| Cow position: | chr12:43031916-43032378 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 15 |
| Conread position: | 384-850 |
| Cow position: | chr12:21426162-21425696 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 300 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 215, 207 |
| Conread position: | 384-850 |
| Cow position: | chr12:32653004-32652530 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 383 |
| Conread position: | 384-850 |
| Cow position: | chr12:37558016-37557552 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 28 |
| Conread position: | 385-522 |
| Cow position: | chr12:21940996-21940864 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 386-660 |
| Cow position: | chr12:32183026-32182760 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 220, 72 |
| Conread position: | 386-669 |
| Cow position: | chr12:21207155-21206870 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 215, 64 |
| Conread position: | 386-847 |
| Cow position: | chr12:21255201-21255637 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 285 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 389-520 |
| Cow position: | chr12:252572-252703 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 103 |
| Conread position: | 389-634 |
| Cow position: | chr12:27933457-27933704 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 123, 212 |
| Conread position: | 393-831 |
| Cow position: | chr12:21058500-21058923 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 61 |
| Conread position: | 395-534 |
| Cow position: | chr12:16326231-16326095 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 396-666 |
| Cow position: | chr12:14663257-14663539 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 86, 210 |
| Conread position: | 406-645 |
| Cow position: | chr12:23238892-23238657 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 423-649 |
| Cow position: | chr12:41706772-41706547 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 714-852 |
| Cow position: | chr12:21897272-21897130 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 10, 46 |
Show alignments to all cow chromosomes.