Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 344-522 |
| Cow position: | chr16:36232760-36232940 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 369-523 |
| Cow position: | chr16:5888279-5888123 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 370-521 |
| Cow position: | chr16:32934954-32934802 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 118 |
| Conread position: | 372-518 |
| Cow position: | chr16:16687679-16687536 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 372-649 |
| Cow position: | chr16:20255487-20255761 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 372-651 |
| Cow position: | chr16:19714027-19714300 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 373-1017 |
| Cow position: | chr16:15369090-15368441 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 7 |
| Conread position: | 374-540 |
| Cow position: | chr16:49236307-49236471 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 9, 90 |
| Conread position: | 374-720 |
| Cow position: | chr16:1430030-1429672 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 247 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 10, 222 |
| Conread position: | 375-632 |
| Cow position: | chr16:408223-408486 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 136, 94 |
| Conread position: | 376-1041 |
| Cow position: | chr16:49257792-49258433 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 35 |
| Conread position: | 378-522 |
| Cow position: | chr16:25152641-25152500 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 382-520 |
| Cow position: | chr16:51083372-51083234 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-631 |
| Cow position: | chr16:29045833-29045581 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 129, 219 |
| Conread position: | 382-648 |
| Cow position: | chr16:11051996-11051735 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 382-650 |
| Cow position: | chr16:29676494-29676760 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 224, 175 |
| Conread position: | 382-775 |
| Cow position: | chr16:18688328-18688720 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 142 |
| Conread position: | 384-534 |
| Cow position: | chr16:36282223-36282073 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-538 |
| Cow position: | chr16:44388729-44388885 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 384-562 |
| Cow position: | chr16:12539123-12539305 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 384-566 |
| Cow position: | chr16:37446547-37446724 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 384-595 |
| Cow position: | chr16:10204616-10204830 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 384-604 |
| Cow position: | chr16:39818435-39818216 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 384-605 |
| Cow position: | chr16:6942389-6942168 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-629 |
| Cow position: | chr16:25440416-25440167 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 127, 219 |
| Conread position: | 384-629 |
| Cow position: | chr16:25458674-25458923 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 134, 219 |
| Conread position: | 384-632 |
| Cow position: | chr16:7676894-7677144 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 128, 216 |
| Conread position: | 384-632 |
| Cow position: | chr16:9776937-9776686 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 127, 217 |
| Conread position: | 384-632 |
| Cow position: | chr16:10437081-10436833 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 134, 214 |
| Conread position: | 384-632 |
| Cow position: | chr16:14666988-14667242 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 127, 220 |
| Conread position: | 384-632 |
| Cow position: | chr16:27735233-27735482 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 128, 214 |
| Conread position: | 384-632 |
| Cow position: | chr16:28472296-28472546 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 101, 190 |
| Conread position: | 384-634 |
| Cow position: | chr16:8817305-8817557 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 128, 216 |
| Conread position: | 384-634 |
| Cow position: | chr16:40297373-40297625 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 128, 216 |
| Conread position: | 384-642 |
| Cow position: | chr16:15183606-15183348 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 99, 46 |
| Conread position: | 384-649 |
| Cow position: | chr16:7905465-7905203 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 154 |
| Conread position: | 384-676 |
| Cow position: | chr16:11744023-11744327 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 106, 136 |
| Conread position: | 384-698 |
| Cow position: | chr16:28233863-28234170 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 44 |
| Conread position: | 384-786 |
| Cow position: | chr16:31530-31126 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 376 |
| Conread position: | 384-812 |
| Cow position: | chr16:2240249-2240682 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 376 |
| Conread position: | 384-846 |
| Cow position: | chr16:32605592-32605131 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-847 |
| Cow position: | chr16:10376496-10376954 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 63 |
| Conread position: | 384-850 |
| Cow position: | chr16:4305504-4305970 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 205, 312 |
| Conread position: | 384-850 |
| Cow position: | chr16:28171593-28172062 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 379 |
| Conread position: | 384-851 |
| Cow position: | chr16:34527544-34527081 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 188 |
| Conread position: | 384-1013 |
| Cow position: | chr16:29031715-29031090 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 83 |
| Conread position: | 385-564 |
| Cow position: | chr16:25084416-25084240 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 386-622 |
| Cow position: | chr16:5660639-5660400 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 386-652 |
| Cow position: | chr16:7483280-7483016 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 126, 83 |
| Conread position: | 388-523 |
| Cow position: | chr16:44673795-44673660 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-631 |
| Cow position: | chr16:23981975-23981732 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 123, 210 |
| Conread position: | 392-558 |
| Cow position: | chr16:26661468-26661298 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 119, 52 |
| Conread position: | 393-632 |
| Cow position: | chr16:2412224-2412464 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 107, 99 |
| Conread position: | 396-632 |
| Cow position: | chr16:1568656-1568897 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 82, 23 |
| Conread position: | 397-534 |
| Cow position: | chr16:49955724-49955859 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 77, 61 |
| Conread position: | 399-632 |
| Cow position: | chr16:24882344-24882578 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 117, 200 |
| Conread position: | 401-635 |
| Cow position: | chr16:31593351-31593582 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 111, 186 |
| Conread position: | 406-632 |
| Cow position: | chr16:15491524-15491296 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 15, 195 |
| Conread position: | 420-667 |
| Cow position: | chr16:42107661-42107409 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 30, 150 |
| Conread position: | 431-631 |
| Cow position: | chr16:42740953-42741149 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 479-696 |
| Cow position: | chr16:23807094-23806881 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 127, 38 |
| Conread position: | 522-856 |
| Cow position: | chr16:36233560-36233891 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 18 |
| Conread position: | 531-998 |
| Cow position: | chr16:32934640-32934152 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 20 |
| Conread position: | 542-1029 |
| Cow position: | chr16:16687411-16686896 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 33 |
| Conread position: | 555-1018 |
| Cow position: | chr16:9928614-9928132 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 334 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 49, 20 |
| Conread position: | 558-851 |
| Cow position: | chr16:49956510-49956790 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 122, 17 |
| Conread position: | 572-1018 |
| Cow position: | chr16:25152306-25151848 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 147 |
| Conread position: | 673-952 |
| Cow position: | chr16:28158164-28157886 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 181, 41 |
| Conread position: | 675-1020 |
| Cow position: | chr16:42107429-42107077 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 49, 85 |
| Conread position: | 715-1019 |
| Cow position: | chr16:42741519-42741212 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 9, 45 |
| Conread position: | 724-1022 |
| Cow position: | chr16:28234166-28234460 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 55, 35 |
Show alignments to all cow chromosomes.