Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 370-649 |
| Cow position: | chr17:16889554-16889276 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 13, 39 |
| Conread position: | 371-649 |
| Cow position: | chr17:22430066-22430342 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 235, 9 |
| Conread position: | 372-523 |
| Cow position: | chr17:4081031-4080882 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 372-649 |
| Cow position: | chr17:20088486-20088755 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 374-539 |
| Cow position: | chr17:42263945-42263784 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 68, 6 |
| Conread position: | 375-850 |
| Cow position: | chr17:6119503-6119027 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 388 |
| Conread position: | 375-853 |
| Cow position: | chr17:249066-248602 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 316 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 169, 119 |
| Conread position: | 382-509 |
| Cow position: | chr17:3694298-3694425 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-532 |
| Cow position: | chr17:15417228-15417078 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-646 |
| Cow position: | chr17:1945570-1945310 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 382-649 |
| Cow position: | chr17:35591623-35591374 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 382-651 |
| Cow position: | chr17:27345199-27344943 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 382-654 |
| Cow position: | chr17:1878921-1878640 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 39, 142 |
| Conread position: | 382-736 |
| Cow position: | chr17:4059476-4059135 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 11 |
| Conread position: | 382-1018 |
| Cow position: | chr17:15370464-15369846 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 70 |
| Conread position: | 383-649 |
| Cow position: | chr17:44853521-44853785 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 384-548 |
| Cow position: | chr17:31200695-31200858 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 384-550 |
| Cow position: | chr17:2286765-2286600 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 384-550 |
| Cow position: | chr17:6259084-6258916 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 384-551 |
| Cow position: | chr17:20666377-20666544 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-560 |
| Cow position: | chr17:24780395-24780221 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 384-631 |
| Cow position: | chr17:18104304-18104559 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 116, 102 |
| Conread position: | 384-632 |
| Cow position: | chr17:11088361-11088606 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 128, 60 |
| Conread position: | 384-632 |
| Cow position: | chr17:40803769-40803533 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 384-635 |
| Cow position: | chr17:1775160-1775407 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 156, 49 |
| Conread position: | 384-648 |
| Cow position: | chr17:18186825-18187085 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 384-649 |
| Cow position: | chr17:23857643-23857900 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 384-651 |
| Cow position: | chr17:455479-455742 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 384-651 |
| Cow position: | chr17:32024796-32025060 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 133, 173 |
| Conread position: | 384-689 |
| Cow position: | chr17:6089776-6090085 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-847 |
| Cow position: | chr17:1383468-1383933 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 301 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-847 |
| Cow position: | chr17:8208453-8207990 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 249 |
| Conread position: | 384-850 |
| Cow position: | chr17:2261464-2261000 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 153 |
| Conread position: | 384-850 |
| Cow position: | chr17:9654106-9654574 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 189, 377 |
| Conread position: | 384-850 |
| Cow position: | chr17:11782715-11782248 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 296 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 217, 376 |
| Conread position: | 384-850 |
| Cow position: | chr17:14217682-14218145 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 318 |
| Conread position: | 384-850 |
| Cow position: | chr17:15157608-15158065 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 301 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 222, 20 |
| Conread position: | 384-850 |
| Cow position: | chr17:22160259-22159791 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 302 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 133, 126 |
| Conread position: | 385-850 |
| Cow position: | chr17:15144018-15144483 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 11 |
| Conread position: | 386-651 |
| Cow position: | chr17:55285-55546 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 386-850 |
| Cow position: | chr17:43987861-43987403 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 66 |
| Conread position: | 388-635 |
| Cow position: | chr17:14893501-14893259 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 124, 54 |
| Conread position: | 389-636 |
| Cow position: | chr17:19269975-19270228 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 123, 214 |
| Conread position: | 392-631 |
| Cow position: | chr17:15322205-15321957 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 120, 214 |
| Conread position: | 393-634 |
| Cow position: | chr17:25736828-25736588 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 143, 204 |
| Conread position: | 396-632 |
| Cow position: | chr17:13857421-13857658 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 134, 203 |
| Conread position: | 396-847 |
| Cow position: | chr17:180958-180513 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 205, 16 |
| Conread position: | 399-634 |
| Cow position: | chr17:16860211-16860449 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 113, 22 |
| Conread position: | 399-651 |
| Cow position: | chr17:1284388-1284636 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 74, 138 |
| Conread position: | 438-786 |
| Cow position: | chr17:15435243-15434893 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 151, 269 |
| Conread position: | 459-757 |
| Cow position: | chr17:2249760-2250063 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 501-846 |
| Cow position: | chr17:229090-229435 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 101, 248 |
| Conread position: | 530-852 |
| Cow position: | chr17:14327091-14327409 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 45 |
| Conread position: | 559-851 |
| Cow position: | chr17:15416482-15416190 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 577-952 |
| Cow position: | chr17:3694614-3694972 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 665-848 |
| Cow position: | chr17:18125214-18125395 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 674-852 |
| Cow position: | chr17:4080207-4080028 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 140, 83 |
| Conread position: | 735-849 |
| Cow position: | chr17:1774728-1774615 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 16, 27 |
Show alignments to all cow chromosomes.