Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 375-848 |
| Cow position: | chr18:54002060-54001587 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 94 |
| Conread position: | 380-781 |
| Cow position: | chr18:29236355-29235952 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 98 |
| Conread position: | 382-487 |
| Cow position: | chr18:48221486-48221381 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-492 |
| Cow position: | chr18:23944764-23944874 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-520 |
| Cow position: | chr18:54024781-54024918 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 382-521 |
| Cow position: | chr18:43200379-43200240 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-534 |
| Cow position: | chr18:30198259-30198107 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 50 |
| Conread position: | 382-605 |
| Cow position: | chr18:54172489-54172705 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 110 |
| Conread position: | 382-647 |
| Cow position: | chr18:33358461-33358200 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 382-651 |
| Cow position: | chr18:35335083-35334814 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 132, 158 |
| Conread position: | 383-651 |
| Cow position: | chr18:2020306-2020571 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 383-652 |
| Cow position: | chr18:51257594-51257326 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 232, 153 |
| Conread position: | 384-509 |
| Cow position: | chr18:6869813-6869938 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-534 |
| Cow position: | chr18:32293376-32293225 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 384-537 |
| Cow position: | chr18:33335450-33335296 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 384-562 |
| Cow position: | chr18:27838713-27838896 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 384-623 |
| Cow position: | chr18:16660425-16660666 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 184 |
| Conread position: | 384-631 |
| Cow position: | chr18:27986504-27986248 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 91, 223 |
| Conread position: | 384-631 |
| Cow position: | chr18:36507917-36507666 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 127, 218 |
| Conread position: | 384-631 |
| Cow position: | chr18:41841241-41841490 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 128, 216 |
| Conread position: | 384-632 |
| Cow position: | chr18:23797235-23796989 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 130, 149 |
| Conread position: | 384-632 |
| Cow position: | chr18:32651535-32651288 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 128, 14 |
| Conread position: | 384-647 |
| Cow position: | chr18:43147332-43147590 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 384-649 |
| Cow position: | chr18:33268468-33268207 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 384-650 |
| Cow position: | chr18:1520737-1520474 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 384-651 |
| Cow position: | chr18:39748183-39747921 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 154, 126 |
| Conread position: | 384-689 |
| Cow position: | chr18:37586112-37586421 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-690 |
| Cow position: | chr18:23746421-23746730 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-786 |
| Cow position: | chr18:33954019-33954424 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 83, 69 |
| Conread position: | 384-847 |
| Cow position: | chr18:55089373-55089837 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 376 |
| Conread position: | 384-850 |
| Cow position: | chr18:11275534-11275991 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 28 |
| Conread position: | 384-850 |
| Cow position: | chr18:16078256-16077791 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 28 |
| Conread position: | 384-850 |
| Cow position: | chr18:19351928-19351465 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 211 |
| Conread position: | 384-850 |
| Cow position: | chr18:44621309-44620843 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 375 |
| Conread position: | 384-850 |
| Cow position: | chr18:51659978-51659508 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 377 |
| Conread position: | 385-645 |
| Cow position: | chr18:53785088-53784829 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 389-562 |
| Cow position: | chr18:25349620-25349448 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 111, 105 |
| Conread position: | 389-631 |
| Cow position: | chr18:37504645-37504405 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 125, 107 |
| Conread position: | 389-652 |
| Cow position: | chr18:40477724-40477463 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 132, 24 |
| Conread position: | 390-649 |
| Cow position: | chr18:54044987-54045243 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 392-652 |
| Cow position: | chr18:28974321-28974577 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 399-562 |
| Cow position: | chr18:16177044-16177212 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 415-551 |
| Cow position: | chr18:42072546-42072682 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 431-645 |
| Cow position: | chr18:52424830-52425045 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 176, 133 |
| Conread position: | 527-740 |
| Cow position: | chr18:33335086-33334870 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 79, 126 |
| Conread position: | 575-849 |
| Cow position: | chr18:43199655-43199385 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 102 |
| Conread position: | 684-868 |
| Cow position: | chr18:3099846-3100031 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 32, 39 |
Show alignments to all cow chromosomes.