Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 371-649 |
| Cow position: | chr19:24748551-24748275 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 234 |
| Conread position: | 371-786 |
| Cow position: | chr19:37471-37055 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 174 |
| Conread position: | 372-603 |
| Cow position: | chr19:1031727-1031501 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 372-649 |
| Cow position: | chr19:32665166-32664889 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 227, 9 |
| Conread position: | 374-604 |
| Cow position: | chr19:27053229-27053465 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 189 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 10, 105 |
| Conread position: | 375-507 |
| Cow position: | chr19:562112-562241 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 14, 5 |
| Conread position: | 375-538 |
| Cow position: | chr19:36476958-36476796 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 375-630 |
| Cow position: | chr19:55078347-55078081 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 101, 93 |
| Conread position: | 382-509 |
| Cow position: | chr19:416257-416129 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 382-520 |
| Cow position: | chr19:40888044-40888181 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 382-523 |
| Cow position: | chr19:32223828-32223969 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-599 |
| Cow position: | chr19:76652-76860 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 382-647 |
| Cow position: | chr19:350963-351227 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 224, 154 |
| Conread position: | 382-649 |
| Cow position: | chr19:32238243-32238509 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 382-651 |
| Cow position: | chr19:801594-801326 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 383-647 |
| Cow position: | chr19:29209166-29208904 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 90 |
| Conread position: | 384-543 |
| Cow position: | chr19:440044-440203 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 384-592 |
| Cow position: | chr19:171799-171596 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 165, 62 |
| Conread position: | 384-593 |
| Cow position: | chr19:10672718-10672937 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 384-631 |
| Cow position: | chr19:203551-203306 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 128, 54 |
| Conread position: | 384-632 |
| Cow position: | chr19:893972-894223 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 384-632 |
| Cow position: | chr19:7487649-7487403 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 384-632 |
| Cow position: | chr19:33872832-33872577 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 128, 221 |
| Conread position: | 384-632 |
| Cow position: | chr19:39390115-39389873 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 165, 138 |
| Conread position: | 384-635 |
| Cow position: | chr19:28582047-28582294 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 121, 83 |
| Conread position: | 384-647 |
| Cow position: | chr19:30371646-30371396 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 384-651 |
| Cow position: | chr19:4252760-4253025 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 384-656 |
| Cow position: | chr19:40852842-40853113 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 110, 116 |
| Conread position: | 384-675 |
| Cow position: | chr19:26271855-26272149 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-678 |
| Cow position: | chr19:34008-33709 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 384-809 |
| Cow position: | chr19:43143275-43142848 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 281 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-847 |
| Cow position: | chr19:32193139-32192674 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 112, 106 |
| Conread position: | 384-850 |
| Cow position: | chr19:495285-494817 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 298 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-850 |
| Cow position: | chr19:772167-771706 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 68 |
| Conread position: | 384-850 |
| Cow position: | chr19:7341627-7341165 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 69 |
| Conread position: | 384-850 |
| Cow position: | chr19:32212505-32212971 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 376 |
| Conread position: | 384-850 |
| Cow position: | chr19:52152688-52153154 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 376 |
| Conread position: | 386-786 |
| Cow position: | chr19:685406-684999 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 114, 382 |
| Conread position: | 391-649 |
| Cow position: | chr19:4533173-4533431 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 128, 165 |
| Conread position: | 393-1017 |
| Cow position: | chr19:39687594-39686962 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 100 |
| Conread position: | 396-537 |
| Cow position: | chr19:15952852-15952711 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 396-572 |
| Cow position: | chr19:353064-353240 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 405-611 |
| Cow position: | chr19:261002-260790 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 105, 206 |
| Conread position: | 405-651 |
| Cow position: | chr19:31340442-31340199 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 422-703 |
| Cow position: | chr19:378894-379167 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 185, 42 |
| Conread position: | 527-655 |
| Cow position: | chr19:19179559-19179427 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 536-1032 |
| Cow position: | chr19:32224134-32224626 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 598-975 |
| Cow position: | chr19:27054884-27055266 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 160 |
| Conread position: | 724-1019 |
| Cow position: | chr19:33721-33419 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 35 |
Show alignments to all cow chromosomes.