Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 348-523 |
| Cow position: | chr21:18820402-18820579 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 368-850 |
| Cow position: | chr21:5016382-5016861 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 13 |
| Conread position: | 370-788 |
| Cow position: | chr21:23809445-23809018 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 12 |
| Conread position: | 371-543 |
| Cow position: | chr21:47947755-47947590 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 371-892 |
| Cow position: | chr21:4590290-4590808 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 161 |
| Conread position: | 372-647 |
| Cow position: | chr21:13124293-13124568 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 372-647 |
| Cow position: | chr21:47939164-47938893 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 372-655 |
| Cow position: | chr21:29086180-29085906 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 373-638 |
| Cow position: | chr21:7267864-7268126 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 11, 42 |
| Conread position: | 374-522 |
| Cow position: | chr21:358698-358549 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 12, 92 |
| Conread position: | 375-558 |
| Cow position: | chr21:2542205-2542387 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 375-632 |
| Cow position: | chr21:48115780-48115526 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 139, 119 |
| Conread position: | 378-651 |
| Cow position: | chr21:3426183-3425916 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 380-888 |
| Cow position: | chr21:2415901-2415387 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 270 |
| Conread position: | 382-538 |
| Cow position: | chr21:20745063-20745218 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 382-538 |
| Cow position: | chr21:25286275-25286124 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 382-586 |
| Cow position: | chr21:3614990-3614785 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 90, 72 |
| Conread position: | 382-639 |
| Cow position: | chr21:4455760-4455507 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 382-649 |
| Cow position: | chr21:2716994-2717256 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 192, 45 |
| Conread position: | 382-651 |
| Cow position: | chr21:34292474-34292212 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 384-484 |
| Cow position: | chr21:41952843-41952742 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 384-505 |
| Cow position: | chr21:2769794-2769915 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-520 |
| Cow position: | chr21:1292517-1292653 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-534 |
| Cow position: | chr21:3798412-3798557 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 384-562 |
| Cow position: | chr21:10849744-10849563 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 116, 110 |
| Conread position: | 384-599 |
| Cow position: | chr21:3778438-3778218 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 116, 110 |
| Conread position: | 384-599 |
| Cow position: | chr21:33251059-33250840 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 106, 116 |
| Conread position: | 384-632 |
| Cow position: | chr21:30560933-30560681 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 141, 187 |
| Conread position: | 384-632 |
| Cow position: | chr21:31559983-31560232 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 128, 214 |
| Conread position: | 384-632 |
| Cow position: | chr21:40272147-40272396 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 128, 219 |
| Conread position: | 384-649 |
| Cow position: | chr21:4076535-4076272 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 384-649 |
| Cow position: | chr21:35596054-35595791 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 384-650 |
| Cow position: | chr21:34259538-34259803 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 384-652 |
| Cow position: | chr21:10566343-10566070 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 128, 219 |
| Conread position: | 384-689 |
| Cow position: | chr21:39580353-39580035 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 123, 202 |
| Conread position: | 384-785 |
| Cow position: | chr21:4090280-4089875 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-786 |
| Cow position: | chr21:28529911-28530315 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 376 |
| Conread position: | 384-846 |
| Cow position: | chr21:46915223-46914759 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 187, 377 |
| Conread position: | 384-847 |
| Cow position: | chr21:19609747-19609282 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 377 |
| Conread position: | 384-847 |
| Cow position: | chr21:37044553-37044092 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 291 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 133, 62 |
| Conread position: | 384-850 |
| Cow position: | chr21:2454350-2453885 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 298 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 218, 101 |
| Conread position: | 384-850 |
| Cow position: | chr21:2476876-2477344 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 292 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 189, 209 |
| Conread position: | 384-850 |
| Cow position: | chr21:11505219-11504753 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 86 |
| Conread position: | 384-850 |
| Cow position: | chr21:12056359-12056816 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 294 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 384-850 |
| Cow position: | chr21:17572561-17572093 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 298 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-850 |
| Cow position: | chr21:26638825-26639290 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 102 |
| Conread position: | 384-850 |
| Cow position: | chr21:26819382-26819846 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 358, 125 |
| Conread position: | 384-850 |
| Cow position: | chr21:27708393-27707925 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 298 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 385-650 |
| Cow position: | chr21:2530448-2530705 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 214, 84 |
| Conread position: | 389-632 |
| Cow position: | chr21:1190701-1190459 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 111, 30 |
| Conread position: | 389-632 |
| Cow position: | chr21:2884077-2884322 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 122, 216 |
| Conread position: | 389-847 |
| Cow position: | chr21:2510284-2509835 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 292 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 212, 311 |
| Conread position: | 399-650 |
| Cow position: | chr21:4223017-4223265 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 207, 160 |
| Conread position: | 400-698 |
| Cow position: | chr21:4183176-4182885 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 90 |
| Conread position: | 436-1015 |
| Cow position: | chr21:15585357-15585917 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 66 |
| Conread position: | 531-1017 |
| Cow position: | chr21:358390-357885 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 44 |
| Conread position: | 534-843 |
| Cow position: | chr21:28873964-28873653 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 41 |
| Conread position: | 534-1029 |
| Cow position: | chr21:18820736-18821245 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 41 |
| Conread position: | 590-1019 |
| Cow position: | chr21:2542394-2542840 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 305 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 17, 153 |
| Conread position: | 608-995 |
| Cow position: | chr21:9891224-9890838 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 56 |
| Conread position: | 620-1018 |
| Cow position: | chr21:3983667-3983276 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 234, 56 |
Show alignments to all cow chromosomes.