Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 162-850 |
| Cow position: | chr22:20240989-20241692 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 295 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 439, 612 |
| Conread position: | 245-380 |
| Cow position: | chr22:2012365-2012229 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 368-850 |
| Cow position: | chr22:18476284-18476769 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 394 |
| Conread position: | 372-799 |
| Cow position: | chr22:3307220-3307648 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 10 |
| Conread position: | 372-952 |
| Cow position: | chr22:1293998-1294557 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 8 |
| Conread position: | 373-646 |
| Cow position: | chr22:118286-118556 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 375-850 |
| Cow position: | chr22:24949297-24948823 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 313 |
| Conread position: | 375-852 |
| Cow position: | chr22:5933500-5933962 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 311 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 375, 94 |
| Conread position: | 380-848 |
| Cow position: | chr22:327685-328149 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 56 |
| Conread position: | 382-649 |
| Cow position: | chr22:5672254-5671989 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 224, 35 |
| Conread position: | 382-649 |
| Cow position: | chr22:40380711-40380446 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 382-661 |
| Cow position: | chr22:36534462-36534742 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 220, 170 |
| Conread position: | 382-757 |
| Cow position: | chr22:1321120-1320733 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 382-798 |
| Cow position: | chr22:11030141-11029741 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 49 |
| Conread position: | 382-850 |
| Cow position: | chr22:44353653-44354109 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 151 |
| Conread position: | 382-1017 |
| Cow position: | chr22:45880623-45881237 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 72 |
| Conread position: | 382-1022 |
| Cow position: | chr22:41420271-41420926 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 31 |
| Conread position: | 383-543 |
| Cow position: | chr22:46636496-46636656 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 383-743 |
| Cow position: | chr22:526417-526774 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 214, 103 |
| Conread position: | 383-804 |
| Cow position: | chr22:44456804-44456377 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 128, 47 |
| Conread position: | 384-518 |
| Cow position: | chr22:6332205-6332071 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-520 |
| Cow position: | chr22:31312836-31312700 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-538 |
| Cow position: | chr22:36272999-36272848 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 384-552 |
| Cow position: | chr22:1046877-1046706 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 384-562 |
| Cow position: | chr22:561207-561393 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 384-562 |
| Cow position: | chr22:39470025-39470206 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 384-632 |
| Cow position: | chr22:18817193-18817453 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 136, 228 |
| Conread position: | 384-632 |
| Cow position: | chr22:19144206-19144456 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 136, 216 |
| Conread position: | 384-632 |
| Cow position: | chr22:21588830-21588579 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 111, 116 |
| Conread position: | 384-632 |
| Cow position: | chr22:36862219-36862468 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 140, 220 |
| Conread position: | 384-649 |
| Cow position: | chr22:39882672-39882921 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 384-651 |
| Cow position: | chr22:1318917-1318657 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 384-651 |
| Cow position: | chr22:42771060-42770797 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 222, 118 |
| Conread position: | 384-786 |
| Cow position: | chr22:10910396-10910800 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 244 |
| Conread position: | 384-847 |
| Cow position: | chr22:44489354-44488890 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 374 |
| Conread position: | 384-850 |
| Cow position: | chr22:693100-692636 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 38 |
| Conread position: | 384-850 |
| Cow position: | chr22:3278891-3279355 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 38 |
| Conread position: | 384-850 |
| Cow position: | chr22:5233838-5234305 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 255 |
| Conread position: | 384-850 |
| Cow position: | chr22:6020293-6019829 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 301 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 52, 69 |
| Conread position: | 384-850 |
| Cow position: | chr22:6984713-6984245 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 303 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-850 |
| Cow position: | chr22:10546109-10545641 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-850 |
| Cow position: | chr22:16199955-16199493 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 63 |
| Conread position: | 384-850 |
| Cow position: | chr22:27310318-27310785 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 376 |
| Conread position: | 384-850 |
| Cow position: | chr22:35672897-35673364 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 376 |
| Conread position: | 384-850 |
| Cow position: | chr22:37264912-37264449 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 304 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 218, 68 |
| Conread position: | 384-850 |
| Cow position: | chr22:44370155-44370607 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 384-851 |
| Cow position: | chr22:5307575-5307108 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 168 |
| Conread position: | 386-850 |
| Cow position: | chr22:1878292-1877829 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 45 |
| Conread position: | 386-850 |
| Cow position: | chr22:2563543-2564014 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 310 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 33, 137 |
| Conread position: | 386-975 |
| Cow position: | chr22:1285451-1286019 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 468, 31 |
| Conread position: | 387-633 |
| Cow position: | chr22:44933467-44933220 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 125, 6 |
| Conread position: | 389-599 |
| Cow position: | chr22:42990663-42990453 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 111, 105 |
| Conread position: | 389-652 |
| Cow position: | chr22:17329251-17329518 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 111, 5 |
| Conread position: | 392-852 |
| Cow position: | chr22:8136715-8137173 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 25 |
| Conread position: | 393-562 |
| Cow position: | chr22:27386908-27387082 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 99 |
| Conread position: | 393-651 |
| Cow position: | chr22:10077241-10077482 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 396-650 |
| Cow position: | chr22:37067372-37067625 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 396-667 |
| Cow position: | chr22:6087594-6087861 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 203, 62 |
| Conread position: | 396-698 |
| Cow position: | chr22:44609111-44608824 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 210, 106 |
| Conread position: | 398-656 |
| Cow position: | chr22:46852850-46852598 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 140, 66 |
| Conread position: | 405-1019 |
| Cow position: | chr22:6504378-6505000 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 147 |
| Conread position: | 419-594 |
| Cow position: | chr22:13712081-13712255 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 13, 49 |
| Conread position: | 420-632 |
| Cow position: | chr22:32487000-32487210 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 196, 137 |
| Conread position: | 425-883 |
| Cow position: | chr22:9464916-9464482 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 36 |
| Conread position: | 498-1005 |
| Cow position: | chr22:8880625-8880113 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 197 |
| Conread position: | 500-952 |
| Cow position: | chr22:1271086-1271530 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 25 |
| Conread position: | 569-817 |
| Cow position: | chr22:46636656-46636902 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 99 |
| Conread position: | 602-878 |
| Cow position: | chr22:17073131-17072854 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 155 |
| Conread position: | 662-832 |
| Cow position: | chr22:6087829-6088000 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 673-952 |
| Cow position: | chr22:34695746-34695462 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 17, 80 |
| Conread position: | 721-841 |
| Cow position: | chr22:44608825-44608706 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.