Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 370-557 |
| Cow position: | chr23:14966447-14966636 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 142, 13 |
| Conread position: | 370-651 |
| Cow position: | chr23:7270086-7269810 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 374-1020 |
| Cow position: | chr23:1025552-1026182 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 55 |
| Conread position: | 375-562 |
| Cow position: | chr23:4641119-4641310 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 382-645 |
| Cow position: | chr23:3013134-3012880 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 382-651 |
| Cow position: | chr23:2524948-2525216 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 382-735 |
| Cow position: | chr23:2573776-2573421 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 132 |
| Conread position: | 384-521 |
| Cow position: | chr23:2765851-2765987 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 384-534 |
| Cow position: | chr23:22879672-22879822 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-599 |
| Cow position: | chr23:27398998-27398781 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 384-599 |
| Cow position: | chr23:28912905-28912683 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 128, 177 |
| Conread position: | 384-631 |
| Cow position: | chr23:969137-969384 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 135, 189 |
| Conread position: | 384-631 |
| Cow position: | chr23:11777978-11777723 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 127, 31 |
| Conread position: | 384-631 |
| Cow position: | chr23:15176549-15176298 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 105, 190 |
| Conread position: | 384-631 |
| Cow position: | chr23:36031878-36032128 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 128, 217 |
| Conread position: | 384-632 |
| Cow position: | chr23:2027633-2027876 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 94, 113 |
| Conread position: | 384-648 |
| Cow position: | chr23:989136-989395 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 133, 64 |
| Conread position: | 384-648 |
| Cow position: | chr23:5779907-5780159 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 384-649 |
| Cow position: | chr23:31595678-31595939 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-650 |
| Cow position: | chr23:5875259-5875521 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 195 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 240, 10 |
| Conread position: | 384-652 |
| Cow position: | chr23:2796067-2796332 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 384-697 |
| Cow position: | chr23:15525115-15524800 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 128, 217 |
| Conread position: | 384-847 |
| Cow position: | chr23:19951126-19951586 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 75 |
| Conread position: | 384-847 |
| Cow position: | chr23:20301670-20301208 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 94 |
| Conread position: | 384-850 |
| Cow position: | chr23:2314069-2314549 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 62, 5 |
| Conread position: | 384-850 |
| Cow position: | chr23:4433936-4433470 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 19 |
| Conread position: | 384-850 |
| Cow position: | chr23:31707462-31706994 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 302 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 386-626 |
| Cow position: | chr23:810617-810377 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 41 |
| Conread position: | 386-850 |
| Cow position: | chr23:14975305-14975769 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 253 |
| Conread position: | 387-672 |
| Cow position: | chr23:22147787-22148077 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 5, 213 |
| Conread position: | 389-757 |
| Cow position: | chr23:28216747-28216377 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 237 |
| Conread position: | 393-631 |
| Cow position: | chr23:2715821-2715574 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 153 |
| Conread position: | 393-631 |
| Cow position: | chr23:19489014-19488774 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 119, 38 |
| Conread position: | 396-809 |
| Cow position: | chr23:3375181-3375596 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 121, 68 |
| Conread position: | 397-512 |
| Cow position: | chr23:40460468-40460353 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 418-797 |
| Cow position: | chr23:4359187-4358807 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 183, 139 |
| Conread position: | 555-831 |
| Cow position: | chr23:22880392-22880669 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 667-1016 |
| Cow position: | chr23:1330710-1331069 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 258 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 187, 92 |
| Conread position: | 778-1017 |
| Cow position: | chr23:10556763-10557020 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 76, 105 |
Show alignments to all cow chromosomes.