Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 370-551 |
| Cow position: | chr24:22792732-22792551 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 147, 142 |
| Conread position: | 372-537 |
| Cow position: | chr24:36707215-36707053 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 372-649 |
| Cow position: | chr24:14583700-14583427 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 372-876 |
| Cow position: | chr24:16649727-16650217 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 10 |
| Conread position: | 373-522 |
| Cow position: | chr24:6335274-6335126 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 373-651 |
| Cow position: | chr24:12236640-12236358 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 0 |
| Conread position: | 374-625 |
| Cow position: | chr24:14391140-14391388 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 375-786 |
| Cow position: | chr24:16085120-16085539 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 277 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 53, 338 |
| Conread position: | 382-520 |
| Cow position: | chr24:15392730-15392869 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 382-585 |
| Cow position: | chr24:11157042-11157245 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-592 |
| Cow position: | chr24:17314743-17314939 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 382-605 |
| Cow position: | chr24:37216298-37216075 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-635 |
| Cow position: | chr24:12798179-12798436 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 98 |
| Conread position: | 382-651 |
| Cow position: | chr24:13531940-13532200 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 156 |
| Conread position: | 382-715 |
| Cow position: | chr24:6144939-6144600 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 213 |
| Conread position: | 382-747 |
| Cow position: | chr24:36560661-36561025 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 106 |
| Conread position: | 383-588 |
| Cow position: | chr24:12131904-12132117 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 117, 109 |
| Conread position: | 384-562 |
| Cow position: | chr24:6357595-6357414 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 384-632 |
| Cow position: | chr24:9544408-9544154 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 94, 210 |
| Conread position: | 384-632 |
| Cow position: | chr24:19832962-19832713 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 128, 215 |
| Conread position: | 384-632 |
| Cow position: | chr24:29186382-29186132 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 128, 216 |
| Conread position: | 384-636 |
| Cow position: | chr24:12208993-12209247 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 384-649 |
| Cow position: | chr24:37301471-37301735 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 384-690 |
| Cow position: | chr24:10657598-10657289 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-786 |
| Cow position: | chr24:29306279-29306681 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 88, 80 |
| Conread position: | 384-809 |
| Cow position: | chr24:6644962-6644535 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 376 |
| Conread position: | 384-809 |
| Cow position: | chr24:33739798-33740225 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 258 |
| Conread position: | 384-847 |
| Cow position: | chr24:13021248-13020784 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-850 |
| Cow position: | chr24:6025552-6026019 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 376 |
| Conread position: | 384-850 |
| Cow position: | chr24:6083542-6083080 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 60 |
| Conread position: | 384-850 |
| Cow position: | chr24:6433782-6433312 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 299 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 207, 259 |
| Conread position: | 384-850 |
| Cow position: | chr24:7712747-7713213 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-850 |
| Cow position: | chr24:9189186-9189652 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 136, 64 |
| Conread position: | 384-850 |
| Cow position: | chr24:12224911-12225376 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 110 |
| Conread position: | 385-809 |
| Cow position: | chr24:13187083-13186652 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 282 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 43, 80 |
| Conread position: | 389-520 |
| Cow position: | chr24:149019-149150 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-523 |
| Cow position: | chr24:12289152-12289284 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 119, 69 |
| Conread position: | 389-604 |
| Cow position: | chr24:4415953-4416176 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 396-632 |
| Cow position: | chr24:12085786-12085542 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 116, 210 |
| Conread position: | 399-655 |
| Cow position: | chr24:14385048-14385307 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 113, 22 |
| Conread position: | 401-786 |
| Cow position: | chr24:12114563-12114949 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 68 |
| Conread position: | 458-809 |
| Cow position: | chr24:8029369-8029016 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 59, 54 |
| Conread position: | 549-1017 |
| Cow position: | chr24:33432124-33431661 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 553-852 |
| Cow position: | chr24:12289953-12290244 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 641-848 |
| Cow position: | chr24:17315183-17315387 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 84, 51 |
| Conread position: | 684-1018 |
| Cow position: | chr24:35992153-35992505 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 170, 19 |
| Conread position: | 789-1027 |
| Cow position: | chr24:36561040-36561287 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 17 |
Show alignments to all cow chromosomes.