Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 371-651 |
| Cow position: | chr27:16432004-16431726 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 268, 13 |
| Conread position: | 371-651 |
| Cow position: | chr27:25002993-25003268 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 371-741 |
| Cow position: | chr27:26556479-26556846 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 222 |
| Conread position: | 372-537 |
| Cow position: | chr27:3996884-3997042 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 374-652 |
| Cow position: | chr27:5910371-5910090 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 120, 231 |
| Conread position: | 375-631 |
| Cow position: | chr27:11471891-11472158 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 157, 234 |
| Conread position: | 382-604 |
| Cow position: | chr27:15331500-15331295 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 72, 84 |
| Conread position: | 382-651 |
| Cow position: | chr27:27051183-27050916 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 382-735 |
| Cow position: | chr27:25805384-25805739 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 110 |
| Conread position: | 384-560 |
| Cow position: | chr27:16034930-16035106 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-631 |
| Cow position: | chr27:1208849-1208599 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 44, 217 |
| Conread position: | 384-631 |
| Cow position: | chr27:15639018-15639266 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 128, 218 |
| Conread position: | 384-632 |
| Cow position: | chr27:23334656-23334406 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 128, 215 |
| Conread position: | 384-651 |
| Cow position: | chr27:16438839-16438575 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 384-651 |
| Cow position: | chr27:27307889-27307625 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 264, 43 |
| Conread position: | 384-652 |
| Cow position: | chr27:14460964-14461236 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 92, 218 |
| Conread position: | 384-850 |
| Cow position: | chr27:2364202-2363735 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 376 |
| Conread position: | 384-850 |
| Cow position: | chr27:15540790-15540334 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 133, 54 |
| Conread position: | 387-651 |
| Cow position: | chr27:5985612-5985863 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 201, 116 |
| Conread position: | 389-632 |
| Cow position: | chr27:13897682-13897443 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 389-639 |
| Cow position: | chr27:26324302-26324044 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 112, 105 |
| Conread position: | 392-632 |
| Cow position: | chr27:27662378-27662135 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 123, 209 |
| Conread position: | 393-599 |
| Cow position: | chr27:892697-892491 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 202, 129 |
| Conread position: | 393-634 |
| Cow position: | chr27:9993710-9993952 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 118, 76 |
| Conread position: | 409-689 |
| Cow position: | chr27:15881365-15881649 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 108, 103 |
| Conread position: | 608-1018 |
| Cow position: | chr27:25116557-25116132 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 29, 43 |
| Conread position: | 724-951 |
| Cow position: | chr27:15331268-15331041 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 130, 35 |
Show alignments to all cow chromosomes.