Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 370-651 |
| Cow position: | chr29:22318433-22318715 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 13 |
| Conread position: | 372-540 |
| Cow position: | chr29:104096-103925 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 153, 11 |
| Conread position: | 382-604 |
| Cow position: | chr29:21431850-21432068 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 382-649 |
| Cow position: | chr29:27041243-27041499 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 382-651 |
| Cow position: | chr29:16769659-16769401 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 382-658 |
| Cow position: | chr29:35196212-35195937 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 46, 155 |
| Conread position: | 382-689 |
| Cow position: | chr29:8663777-8663479 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 7 |
| Conread position: | 382-838 |
| Cow position: | chr29:2750879-2751334 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 190 |
| Conread position: | 383-650 |
| Cow position: | chr29:34622554-34622809 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 45, 67 |
| Conread position: | 383-725 |
| Cow position: | chr29:42649861-42649518 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 210, 122 |
| Conread position: | 383-725 |
| Cow position: | chr29:42801721-42801378 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 210, 122 |
| Conread position: | 384-523 |
| Cow position: | chr29:45464275-45464413 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 384-562 |
| Cow position: | chr29:21246074-21245895 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 135, 44 |
| Conread position: | 384-563 |
| Cow position: | chr29:9644657-9644828 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 124, 26 |
| Conread position: | 384-564 |
| Cow position: | chr29:16109197-16109017 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-595 |
| Cow position: | chr29:23975335-23975113 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 384-599 |
| Cow position: | chr29:2689423-2689212 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 211, 125 |
| Conread position: | 384-631 |
| Cow position: | chr29:48974-49232 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 94, 225 |
| Conread position: | 384-631 |
| Cow position: | chr29:10824454-10824703 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 384-631 |
| Cow position: | chr29:25933042-25933276 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 384-632 |
| Cow position: | chr29:7431714-7431967 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 128, 219 |
| Conread position: | 384-632 |
| Cow position: | chr29:10648743-10648996 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 94, 219 |
| Conread position: | 384-632 |
| Cow position: | chr29:15984708-15984458 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 128, 216 |
| Conread position: | 384-632 |
| Cow position: | chr29:26165316-26165565 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 128, 215 |
| Conread position: | 384-632 |
| Cow position: | chr29:32539313-32539076 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 384-632 |
| Cow position: | chr29:38226497-38226242 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 221 |
| Conread position: | 384-632 |
| Cow position: | chr29:45459226-45458976 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 128, 216 |
| Conread position: | 384-633 |
| Cow position: | chr29:45587796-45588047 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 128, 191 |
| Conread position: | 384-645 |
| Cow position: | chr29:11048793-11048530 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 151, 184 |
| Conread position: | 384-651 |
| Cow position: | chr29:10848593-10848860 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 78, 153 |
| Conread position: | 384-652 |
| Cow position: | chr29:16022035-16021763 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 104, 218 |
| Conread position: | 384-652 |
| Cow position: | chr29:40503477-40503746 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 128, 215 |
| Conread position: | 384-672 |
| Cow position: | chr29:5957091-5956796 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 126, 108 |
| Conread position: | 384-771 |
| Cow position: | chr29:15969671-15970060 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 133, 38 |
| Conread position: | 384-771 |
| Cow position: | chr29:19884721-19884332 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 376 |
| Conread position: | 384-786 |
| Cow position: | chr29:13577896-13577494 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 59 |
| Conread position: | 384-786 |
| Cow position: | chr29:32560585-32560990 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 268 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-850 |
| Cow position: | chr29:611144-611601 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 384-850 |
| Cow position: | chr29:670249-670714 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 293 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 205, 376 |
| Conread position: | 384-850 |
| Cow position: | chr29:18857317-18857785 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 298 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-850 |
| Cow position: | chr29:27250863-27251331 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-850 |
| Cow position: | chr29:35296367-35295903 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 68 |
| Conread position: | 384-850 |
| Cow position: | chr29:40468255-40467790 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 189, 110 |
| Conread position: | 384-967 |
| Cow position: | chr29:31121263-31120677 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 386-850 |
| Cow position: | chr29:15895379-15895842 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 288 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 187, 207 |
| Conread position: | 389-562 |
| Cow position: | chr29:2099343-2099166 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 389-599 |
| Cow position: | chr29:34800292-34800505 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 111, 97 |
| Conread position: | 389-624 |
| Cow position: | chr29:19623747-19623986 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 33 |
| Conread position: | 389-652 |
| Cow position: | chr29:19652605-19652339 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 122, 212 |
| Conread position: | 391-649 |
| Cow position: | chr29:43366692-43366946 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 6, 146 |
| Conread position: | 391-816 |
| Cow position: | chr29:32315502-32315079 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 234 |
| Conread position: | 394-631 |
| Cow position: | chr29:43322043-43321805 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 118, 204 |
| Conread position: | 399-786 |
| Cow position: | chr29:27981068-27981457 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 174, 14 |
| Conread position: | 406-532 |
| Cow position: | chr29:6874380-6874506 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 442-850 |
| Cow position: | chr29:34925269-34924861 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 135, 73 |
| Conread position: | 460-846 |
| Cow position: | chr29:29234094-29234482 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 52 |
| Conread position: | 559-767 |
| Cow position: | chr29:45465035-45465242 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 561-1018 |
| Cow position: | chr29:103355-102879 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 14 |
| Conread position: | 575-852 |
| Cow position: | chr29:34752943-34753220 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 20, 183 |
Show alignments to all cow chromosomes.