Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 375-599 |
| Cow position: | chr4:6491113-6491342 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 141, 28 |
| Conread position: | 375-786 |
| Cow position: | chr4:30308233-30308645 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 350 |
| Conread position: | 375-850 |
| Cow position: | chr4:16055794-16055315 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 279 |
| Conread position: | 382-533 |
| Cow position: | chr4:1371762-1371909 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 382-742 |
| Cow position: | chr4:21338761-21339118 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 170 |
| Conread position: | 382-852 |
| Cow position: | chr4:4168711-4168262 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 109 |
| Conread position: | 382-883 |
| Cow position: | chr4:34185631-34186096 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 79 |
| Conread position: | 383-651 |
| Cow position: | chr4:66925241-66924975 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 184, 169 |
| Conread position: | 384-562 |
| Cow position: | chr4:41118351-41118167 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 384-565 |
| Cow position: | chr4:46713108-46713296 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 384-567 |
| Cow position: | chr4:3124972-3124790 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 384-623 |
| Cow position: | chr4:43880335-43880092 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 128, 218 |
| Conread position: | 384-624 |
| Cow position: | chr4:355140-354895 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 136, 219 |
| Conread position: | 384-628 |
| Cow position: | chr4:16359130-16358885 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 116, 215 |
| Conread position: | 384-631 |
| Cow position: | chr4:17927318-17927564 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 135, 188 |
| Conread position: | 384-631 |
| Cow position: | chr4:25600376-25600626 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 132, 217 |
| Conread position: | 384-631 |
| Cow position: | chr4:43320412-43320662 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 92, 84 |
| Conread position: | 384-631 |
| Cow position: | chr4:48025630-48025379 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 125, 218 |
| Conread position: | 384-632 |
| Cow position: | chr4:1050398-1050651 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 66, 221 |
| Conread position: | 384-632 |
| Cow position: | chr4:3960820-3960572 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 128, 214 |
| Conread position: | 384-632 |
| Cow position: | chr4:4905379-4905127 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 128, 178 |
| Conread position: | 384-632 |
| Cow position: | chr4:33074158-33074406 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 128, 51 |
| Conread position: | 384-632 |
| Cow position: | chr4:33493035-33492782 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 136, 219 |
| Conread position: | 384-632 |
| Cow position: | chr4:36895598-36895348 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 128, 217 |
| Conread position: | 384-634 |
| Cow position: | chr4:13491797-13491546 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 128, 188 |
| Conread position: | 384-634 |
| Cow position: | chr4:24445974-24446229 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 94, 63 |
| Conread position: | 384-634 |
| Cow position: | chr4:41330664-41330416 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 128, 173 |
| Conread position: | 384-649 |
| Cow position: | chr4:11617698-11617438 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 231, 93 |
| Conread position: | 384-786 |
| Cow position: | chr4:47764979-47765384 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 189, 209 |
| Conread position: | 384-846 |
| Cow position: | chr4:41953986-41953535 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 212, 28 |
| Conread position: | 384-847 |
| Cow position: | chr4:602187-601727 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 295 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 195, 20 |
| Conread position: | 384-850 |
| Cow position: | chr4:101737-102195 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 294 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 384-850 |
| Cow position: | chr4:528186-527720 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 290 |
| Conread position: | 384-850 |
| Cow position: | chr4:6269430-6269896 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 69 |
| Conread position: | 384-850 |
| Cow position: | chr4:6566411-6565945 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 384-850 |
| Cow position: | chr4:9311429-9310960 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 299 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 13, 129 |
| Conread position: | 384-850 |
| Cow position: | chr4:23114984-23115452 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 133, 126 |
| Conread position: | 384-850 |
| Cow position: | chr4:24652292-24652760 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 299 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-850 |
| Cow position: | chr4:32211321-32210856 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 189, 140 |
| Conread position: | 387-599 |
| Cow position: | chr4:57978643-57978430 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 125, 6 |
| Conread position: | 387-1029 |
| Cow position: | chr4:46663419-46662769 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 93 |
| Conread position: | 389-634 |
| Cow position: | chr4:45050076-45050326 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 123, 184 |
| Conread position: | 390-648 |
| Cow position: | chr4:47718337-47718587 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 393-631 |
| Cow position: | chr4:18516105-18515859 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 213 |
| Conread position: | 396-634 |
| Cow position: | chr4:29532502-29532743 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 112, 205 |
| Conread position: | 405-841 |
| Cow position: | chr4:28830245-28829825 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 45 |
| Conread position: | 458-844 |
| Cow position: | chr4:5879082-5878699 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 133, 284 |
| Conread position: | 464-850 |
| Cow position: | chr4:1931482-1931869 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 127, 296 |
| Conread position: | 554-1019 |
| Cow position: | chr4:54954854-54954374 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 315 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 52, 21 |
| Conread position: | 587-775 |
| Cow position: | chr4:1465064-1465255 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 177 |
| Conread position: | 705-892 |
| Cow position: | chr4:27301387-27301575 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 141, 54 |
Show alignments to all cow chromosomes.