Cow genome map

Conread name: Ss1.1-Thy1-THY010003G05.5

Conread position: 344-523
Cow position: chr5:27060718-27060891 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 107

Conread position: 370-534
Cow position: chr5:23688145-23688310 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 11, 20

Conread position: 370-651
Cow position: chr5:41551565-41551845 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 102, 13

Conread position: 370-848
Cow position: chr5:49594132-49594607 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 13

Conread position: 370-850
Cow position: chr5:54936211-54936691 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 305
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 170, 13

Conread position: 371-628
Cow position: chr5:7273195-7272944 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 182
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 143, 10

Conread position: 372-521
Cow position: chr5:27000534-27000386 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 372-777
Cow position: chr5:29456952-29456549 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 8

Conread position: 372-818
Cow position: chr5:41530243-41530682 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 11

Conread position: 374-651
Cow position: chr5:28030845-28030570 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 190
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 9, 172

Conread position: 375-631
Cow position: chr5:12184571-12184310 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 137, 228

Conread position: 375-703
Cow position: chr5:23716625-23716945 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 29

Conread position: 382-586
Cow position: chr5:13607438-13607642 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 382-595
Cow position: chr5:39165448-39165660 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 170, 0

Conread position: 382-644
Cow position: chr5:12682182-12682448 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 209

Conread position: 382-649
Cow position: chr5:49181628-49181365 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 154, 0

Conread position: 382-651
Cow position: chr5:27652631-27652893 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 224, 82

Conread position: 382-736
Cow position: chr5:12644788-12645155 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 261
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 10, 159

Conread position: 383-638
Cow position: chr5:46659020-46658776 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 222, 31

Conread position: 384-545
Cow position: chr5:48809390-48809553 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 128, 0

Conread position: 384-551
Cow position: chr5:2530562-2530395 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 384-562
Cow position: chr5:1342477-1342656 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 116, 33

Conread position: 384-562
Cow position: chr5:30578644-30578464 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 116, 29

Conread position: 384-585
Cow position: chr5:55149954-55150150 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 55, 0

Conread position: 384-599
Cow position: chr5:24097969-24097755 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 127, 51

Conread position: 384-599
Cow position: chr5:64782696-64782916 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 155
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 128, 78

Conread position: 384-604
Cow position: chr5:26769141-26768922 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 173, 0

Conread position: 384-623
Cow position: chr5:34695905-34695664 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 176
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 128, 216

Conread position: 384-631
Cow position: chr5:2430813-2431067 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 101, 68

Conread position: 384-631
Cow position: chr5:2913770-2913522 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 128, 215

Conread position: 384-631
Cow position: chr5:4068309-4068058 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 73, 91

Conread position: 384-631
Cow position: chr5:10918123-10917872 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 128, 216

Conread position: 384-632
Cow position: chr5:3504923-3505171 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 178
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 130, 38

Conread position: 384-632
Cow position: chr5:14500827-14501077 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 172
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 44, 216

Conread position: 384-632
Cow position: chr5:49119957-49120207 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 94, 158

Conread position: 384-632
Cow position: chr5:55627324-55627076 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 128, 78

Conread position: 384-632
Cow position: chr5:59282081-59281829 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 169
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 128, 219

Conread position: 384-637
Cow position: chr5:58195288-58195036 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 116, 63

Conread position: 384-645
Cow position: chr5:49123508-49123768 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 116, 108

Conread position: 384-647
Cow position: chr5:29008705-29008444 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 185
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 211, 151

Conread position: 384-649
Cow position: chr5:25207469-25207722 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 187
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 58, 97

Conread position: 384-649
Cow position: chr5:32733901-32734164 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 222, 68

Conread position: 384-649
Cow position: chr5:45699349-45699089 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 118, 0

Conread position: 384-649
Cow position: chr5:52804674-52804419 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 193
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 7, 0

Conread position: 384-651
Cow position: chr5:27569525-27569259 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 153, 0

Conread position: 384-678
Cow position: chr5:37755853-37756151 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 203
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 133, 128

Conread position: 384-683
Cow position: chr5:46663291-46662990 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 272

Conread position: 384-690
Cow position: chr5:13383994-13384303 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 203
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 133, 128

Conread position: 384-690
Cow position: chr5:59144065-59143756 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 204
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 133, 66

Conread position: 384-737
Cow position: chr5:32674422-32674776 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 120

Conread position: 384-740
Cow position: chr5:28006549-28006192 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 152

Conread position: 384-786
Cow position: chr5:42504050-42503645 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 256
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 133, 128

Conread position: 384-797
Cow position: chr5:3963758-3963346 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 313

Conread position: 384-809
Cow position: chr5:14379454-14379027 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 276
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 177, 181

Conread position: 384-846
Cow position: chr5:4019912-4020362 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 293
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 205, 68

Conread position: 384-847
Cow position: chr5:10776958-10777421 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 341

Conread position: 384-847
Cow position: chr5:53714542-53714077 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 302
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 133, 128

Conread position: 384-850
Cow position: chr5:308293-308761 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 294
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 133, 128

Conread position: 384-850
Cow position: chr5:4088157-4087694 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 300
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 133, 47

Conread position: 384-850
Cow position: chr5:10443916-10444379 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 68

Conread position: 384-850
Cow position: chr5:18663533-18663064 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 301
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 43, 210

Conread position: 384-850
Cow position: chr5:23960822-23961286 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 299
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 177, 128

Conread position: 384-850
Cow position: chr5:27909982-27910448 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 347

Conread position: 384-850
Cow position: chr5:45182819-45183286 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 376

Conread position: 384-850
Cow position: chr5:46006115-46006577 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 35

Conread position: 384-850
Cow position: chr5:47831807-47832274 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 376

Conread position: 384-850
Cow position: chr5:48468986-48469454 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 299
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 132, 128

Conread position: 384-851
Cow position: chr5:10844587-10845055 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 256

Conread position: 384-1019
Cow position: chr5:41963611-41964247 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 197

Conread position: 385-649
Cow position: chr5:34202280-34202027 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 178
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 386-652
Cow position: chr5:57483222-57483494 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 181
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 110

Conread position: 386-809
Cow position: chr5:46775376-46774952 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 371

Conread position: 386-850
Cow position: chr5:32771766-32771296 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 261

Conread position: 386-850
Cow position: chr5:35299065-35298602 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 296
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 203, 151

Conread position: 386-1020
Cow position: chr5:61273852-61274499 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 375

Conread position: 389-631
Cow position: chr5:46739287-46739530 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 171
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 123, 169

Conread position: 389-632
Cow position: chr5:3785125-3784884 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 172
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 123, 107

Conread position: 389-632
Cow position: chr5:54793304-54793546 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 93, 63

Conread position: 389-735
Cow position: chr5:4384540-4384191 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 64

Conread position: 389-850
Cow position: chr5:31705858-31705392 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 91

Conread position: 396-852
Cow position: chr5:32945190-32944719 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 172

Conread position: 398-634
Cow position: chr5:25917006-25916779 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 78, 70

Conread position: 531-852
Cow position: chr5:46631380-46631697 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 228
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 74, 27

Conread position: 577-1029
Cow position: chr5:27061499-27061977 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 324
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 18, 187

Conread position: 646-952
Cow position: chr5:23688504-23688794 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 216
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 208, 54

Conread position: 647-1040
Cow position: chr5:28044909-28045327 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 283
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 205, 110

Conread position: 732-1019
Cow position: chr5:46658158-46657856 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 223
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 60, 27

Show alignments to all cow chromosomes.