Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 | 
| Conread position: | 370-487 | 
| Cow position: | chr6:35421203-35421318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 118 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 370-667 | 
| Cow position: | chr6:47958548-47958257 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 236, 13 | 
| Conread position: | 370-850 | 
| Cow position: | chr6:65908873-65908395 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 147, 13 | 
| Conread position: | 371-632 | 
| Cow position: | chr6:64713026-64712762 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 5e-26 | 
| Alignm gaps (pig, cow): | 22, 55 | 
| Conread position: | 371-683 | 
| Cow position: | chr6:64714593-64714278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 22, 55 | 
| Conread position: | 371-844 | 
| Cow position: | chr6:21836673-21837148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 182, 7 | 
| Conread position: | 371-849 | 
| Cow position: | chr6:40314355-40313889 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 57, 7 | 
| Conread position: | 372-508 | 
| Cow position: | chr6:37477705-37477570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 10, 0 | 
| Conread position: | 372-651 | 
| Cow position: | chr6:2401739-2401449 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 138, 8 | 
| Conread position: | 374-632 | 
| Cow position: | chr6:2111480-2111735 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 11, 155 | 
| Conread position: | 374-645 | 
| Cow position: | chr6:11278223-11278495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 14, 129 | 
| Conread position: | 374-646 | 
| Cow position: | chr6:42926873-42926608 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 9, 0 | 
| Conread position: | 375-559 | 
| Cow position: | chr6:21971147-21970959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 139, 0 | 
| Conread position: | 375-736 | 
| Cow position: | chr6:66231287-66230928 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 227, 140 | 
| Conread position: | 375-784 | 
| Cow position: | chr6:44151105-44151509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 331, 177 | 
| Conread position: | 382-520 | 
| Cow position: | chr6:30478550-30478410 (view UCSC Genome Browser custom track) | 
| Alignm length: | 141 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 382-649 | 
| Cow position: | chr6:10559152-10559414 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 24, 75 | 
| Conread position: | 382-649 | 
| Cow position: | chr6:13276051-13275789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 50, 157 | 
| Conread position: | 382-780 | 
| Cow position: | chr6:38231731-38231332 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 184 | 
| Conread position: | 382-1006 | 
| Cow position: | chr6:12093399-12094029 (view UCSC Genome Browser custom track) | 
| Alignm length: | 650 | 
| Alignm identity: | 445 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 59 | 
| Conread position: | 384-488 | 
| Cow position: | chr6:13318224-13318328 (view UCSC Genome Browser custom track) | 
| Alignm length: | 105 | 
| Alignm identity: | 85 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 384-518 | 
| Cow position: | chr6:39437099-39436965 (view UCSC Genome Browser custom track) | 
| Alignm length: | 136 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 116, 110 | 
| Conread position: | 384-522 | 
| Cow position: | chr6:13103487-13103350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 139 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 52, 0 | 
| Conread position: | 384-562 | 
| Cow position: | chr6:17045423-17045240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 4e-24 | 
| Alignm gaps (pig, cow): | 119, 0 | 
| Conread position: | 384-562 | 
| Cow position: | chr6:30275709-30275891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 127, 175 | 
| Conread position: | 384-578 | 
| Cow position: | chr6:65927140-65926950 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 85, 0 | 
| Conread position: | 384-605 | 
| Cow position: | chr6:1405799-1406019 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 207, 0 | 
| Conread position: | 384-624 | 
| Cow position: | chr6:913092-912852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 128, 200 | 
| Conread position: | 384-631 | 
| Cow position: | chr6:3278489-3278736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 9e-32 | 
| Alignm gaps (pig, cow): | 92, 84 | 
| Conread position: | 384-631 | 
| Cow position: | chr6:8201193-8200944 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 132, 216 | 
| Conread position: | 384-631 | 
| Cow position: | chr6:15141709-15141951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 140, 0 | 
| Conread position: | 384-631 | 
| Cow position: | chr6:20561639-20561892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 128, 218 | 
| Conread position: | 384-631 | 
| Cow position: | chr6:21686363-21686108 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 8e-31 | 
| Alignm gaps (pig, cow): | 127, 222 | 
| Conread position: | 384-631 | 
| Cow position: | chr6:24238512-24238263 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 134, 216 | 
| Conread position: | 384-631 | 
| Cow position: | chr6:55544866-55545117 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 94, 217 | 
| Conread position: | 384-631 | 
| Cow position: | chr6:62829438-62829686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 128, 82 | 
| Conread position: | 384-631 | 
| Cow position: | chr6:65841050-65840798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 44, 221 | 
| Conread position: | 384-632 | 
| Cow position: | chr6:5951774-5952025 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 92, 84 | 
| Conread position: | 384-632 | 
| Cow position: | chr6:36525506-36525258 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 135, 214 | 
| Conread position: | 384-632 | 
| Cow position: | chr6:47043963-47044222 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 69, 225 | 
| Conread position: | 384-632 | 
| Cow position: | chr6:50497989-50498237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 128, 43 | 
| Conread position: | 384-649 | 
| Cow position: | chr6:65007329-65007072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 118, 125 | 
| Conread position: | 384-651 | 
| Cow position: | chr6:19453403-19453137 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 152, 0 | 
| Conread position: | 384-651 | 
| Cow position: | chr6:33388305-33388028 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 4e-24 | 
| Alignm gaps (pig, cow): | 98, 163 | 
| Conread position: | 384-689 | 
| Cow position: | chr6:6935697-6936006 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 8e-31 | 
| Alignm gaps (pig, cow): | 133, 128 | 
| Conread position: | 384-690 | 
| Cow position: | chr6:41757556-41757865 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 133, 128 | 
| Conread position: | 384-690 | 
| Cow position: | chr6:45671697-45671388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 133, 128 | 
| Conread position: | 384-697 | 
| Cow position: | chr6:33794895-33795212 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 133, 128 | 
| Conread position: | 384-735 | 
| Cow position: | chr6:43617143-43616787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 44, 166 | 
| Conread position: | 384-786 | 
| Cow position: | chr6:13943327-13942925 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 208, 232 | 
| Conread position: | 384-786 | 
| Cow position: | chr6:13977970-13977568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 87, 63 | 
| Conread position: | 384-786 | 
| Cow position: | chr6:34126779-34126366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 59, 138 | 
| Conread position: | 384-786 | 
| Cow position: | chr6:40274686-40274282 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 133, 102 | 
| Conread position: | 384-847 | 
| Cow position: | chr6:28062779-28062325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 467 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 217, 54 | 
| Conread position: | 384-847 | 
| Cow position: | chr6:57870576-57871040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 467 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 205, 375 | 
| Conread position: | 384-850 | 
| Cow position: | chr6:332051-332517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 205, 106 | 
| Conread position: | 384-850 | 
| Cow position: | chr6:734604-734136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 133, 128 | 
| Conread position: | 384-850 | 
| Cow position: | chr6:2374138-2373675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 205, 80 | 
| Conread position: | 384-850 | 
| Cow position: | chr6:2554139-2553675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 177, 182 | 
| Conread position: | 384-850 | 
| Cow position: | chr6:7142036-7142498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 212, 69 | 
| Conread position: | 384-850 | 
| Cow position: | chr6:8444229-8444694 (view UCSC Genome Browser custom track) | 
| Alignm length: | 472 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 133, 128 | 
| Conread position: | 384-850 | 
| Cow position: | chr6:13846496-13846032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 217, 153 | 
| Conread position: | 384-850 | 
| Cow position: | chr6:26671437-26671904 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 205, 370 | 
| Conread position: | 384-850 | 
| Cow position: | chr6:27169004-27168539 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 207, 242 | 
| Conread position: | 384-850 | 
| Cow position: | chr6:44028485-44028018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 205, 376 | 
| Conread position: | 384-850 | 
| Cow position: | chr6:58409585-58410053 (view UCSC Genome Browser custom track) | 
| Alignm length: | 472 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 177, 193 | 
| Conread position: | 384-850 | 
| Cow position: | chr6:68026209-68025744 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 205, 43 | 
| Conread position: | 384-851 | 
| Cow position: | chr6:17598852-17599316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 200, 68 | 
| Conread position: | 384-1015 | 
| Cow position: | chr6:6477001-6477616 (view UCSC Genome Browser custom track) | 
| Alignm length: | 648 | 
| Alignm identity: | 480 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 211, 48 | 
| Conread position: | 386-850 | 
| Cow position: | chr6:39907582-39907118 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 215, 120 | 
| Conread position: | 387-521 | 
| Cow position: | chr6:7180201-7180335 (view UCSC Genome Browser custom track) | 
| Alignm length: | 135 | 
| Alignm identity: | 105 | 
| Alignm E-value: | 5e-26 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 387-540 | 
| Cow position: | chr6:10054097-10053946 (view UCSC Genome Browser custom track) | 
| Alignm length: | 154 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 389-559 | 
| Cow position: | chr6:65880316-65880143 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 111, 105 | 
| Conread position: | 389-583 | 
| Cow position: | chr6:8761995-8762191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 4e-24 | 
| Alignm gaps (pig, cow): | 123, 148 | 
| Conread position: | 389-600 | 
| Cow position: | chr6:35877261-35877481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 89, 5 | 
| Conread position: | 389-631 | 
| Cow position: | chr6:40555154-40555399 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 97, 139 | 
| Conread position: | 389-632 | 
| Cow position: | chr6:34893551-34893799 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 8e-31 | 
| Alignm gaps (pig, cow): | 123, 189 | 
| Conread position: | 389-652 | 
| Cow position: | chr6:701441-701171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 4e-24 | 
| Alignm gaps (pig, cow): | 75, 222 | 
| Conread position: | 389-652 | 
| Cow position: | chr6:29310824-29310555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 34, 98 | 
| Conread position: | 389-786 | 
| Cow position: | chr6:65822674-65823072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 200, 135 | 
| Conread position: | 390-672 | 
| Cow position: | chr6:28169544-28169251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 92, 217 | 
| Conread position: | 392-632 | 
| Cow position: | chr6:3488939-3489180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 120, 209 | 
| Conread position: | 393-559 | 
| Cow position: | chr6:27468719-27468549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 87, 76 | 
| Conread position: | 393-632 | 
| Cow position: | chr6:27530543-27530784 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 119, 207 | 
| Conread position: | 396-632 | 
| Cow position: | chr6:52063-52301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 116, 204 | 
| Conread position: | 399-609 | 
| Cow position: | chr6:42723901-42724114 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 37, 46 | 
| Conread position: | 453-812 | 
| Cow position: | chr6:22852559-22852920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 154, 118 | 
| Conread position: | 473-850 | 
| Cow position: | chr6:1412140-1412517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 116, 168 | 
| Conread position: | 549-1018 | 
| Cow position: | chr6:4904883-4905358 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 26 | 
| Conread position: | 559-835 | 
| Cow position: | chr6:65900762-65901034 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 46, 16 | 
| Conread position: | 662-975 | 
| Cow position: | chr6:47958290-47957996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 16, 23 | 
| Conread position: | 705-1017 | 
| Cow position: | chr6:26490846-26490524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 95, 51 | 
| Conread position: | 728-865 | 
| Cow position: | chr6:6100801-6100938 (view UCSC Genome Browser custom track) | 
| Alignm length: | 141 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 96, 33 | 
Show alignments to all cow chromosomes.
