Cow genome map

Conread name: Ss1.1-Thy1-THY010003G05.5

Conread position: 370-487
Cow position: chr6:35421203-35421318 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 370-667
Cow position: chr6:47958548-47958257 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 13

Conread position: 370-850
Cow position: chr6:65908873-65908395 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 13

Conread position: 371-632
Cow position: chr6:64713026-64712762 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 184
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 55

Conread position: 371-683
Cow position: chr6:64714593-64714278 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 185
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 22, 55

Conread position: 371-844
Cow position: chr6:21836673-21837148 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 313
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 182, 7

Conread position: 371-849
Cow position: chr6:40314355-40313889 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 310
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 57, 7

Conread position: 372-508
Cow position: chr6:37477705-37477570 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 372-651
Cow position: chr6:2401739-2401449 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 206
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 138, 8

Conread position: 374-632
Cow position: chr6:2111480-2111735 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 181
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 11, 155

Conread position: 374-645
Cow position: chr6:11278223-11278495 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 14, 129

Conread position: 374-646
Cow position: chr6:42926873-42926608 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 9, 0

Conread position: 375-559
Cow position: chr6:21971147-21970959 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 139, 0

Conread position: 375-736
Cow position: chr6:66231287-66230928 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 140

Conread position: 375-784
Cow position: chr6:44151105-44151509 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 267
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 331, 177

Conread position: 382-520
Cow position: chr6:30478550-30478410 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 58, 0

Conread position: 382-649
Cow position: chr6:10559152-10559414 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 188
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 24, 75

Conread position: 382-649
Cow position: chr6:13276051-13275789 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 193
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 50, 157

Conread position: 382-780
Cow position: chr6:38231731-38231332 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 184

Conread position: 382-1006
Cow position: chr6:12093399-12094029 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 59

Conread position: 384-488
Cow position: chr6:13318224-13318328 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 384-518
Cow position: chr6:39437099-39436965 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 116, 110

Conread position: 384-522
Cow position: chr6:13103487-13103350 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 384-562
Cow position: chr6:17045423-17045240 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 384-562
Cow position: chr6:30275709-30275891 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 127, 175

Conread position: 384-578
Cow position: chr6:65927140-65926950 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 85, 0

Conread position: 384-605
Cow position: chr6:1405799-1406019 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 207, 0

Conread position: 384-624
Cow position: chr6:913092-912852 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 170
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 128, 200

Conread position: 384-631
Cow position: chr6:3278489-3278736 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 174
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 92, 84

Conread position: 384-631
Cow position: chr6:8201193-8200944 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 175
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 132, 216

Conread position: 384-631
Cow position: chr6:15141709-15141951 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 140, 0

Conread position: 384-631
Cow position: chr6:20561639-20561892 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 128, 218

Conread position: 384-631
Cow position: chr6:21686363-21686108 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 127, 222

Conread position: 384-631
Cow position: chr6:24238512-24238263 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 134, 216

Conread position: 384-631
Cow position: chr6:55544866-55545117 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 94, 217

Conread position: 384-631
Cow position: chr6:62829438-62829686 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 128, 82

Conread position: 384-631
Cow position: chr6:65841050-65840798 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 171
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 221

Conread position: 384-632
Cow position: chr6:5951774-5952025 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 92, 84

Conread position: 384-632
Cow position: chr6:36525506-36525258 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 135, 214

Conread position: 384-632
Cow position: chr6:47043963-47044222 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 69, 225

Conread position: 384-632
Cow position: chr6:50497989-50498237 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 176
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 128, 43

Conread position: 384-649
Cow position: chr6:65007329-65007072 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 189
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 118, 125

Conread position: 384-651
Cow position: chr6:19453403-19453137 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 184
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 152, 0

Conread position: 384-651
Cow position: chr6:33388305-33388028 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 184
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 98, 163

Conread position: 384-689
Cow position: chr6:6935697-6936006 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 203
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 133, 128

Conread position: 384-690
Cow position: chr6:41757556-41757865 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 205
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 133, 128

Conread position: 384-690
Cow position: chr6:45671697-45671388 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 204
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 133, 128

Conread position: 384-697
Cow position: chr6:33794895-33795212 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 207
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 133, 128

Conread position: 384-735
Cow position: chr6:43617143-43616787 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 238
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 44, 166

Conread position: 384-786
Cow position: chr6:13943327-13942925 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 264
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 208, 232

Conread position: 384-786
Cow position: chr6:13977970-13977568 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 259
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 87, 63

Conread position: 384-786
Cow position: chr6:34126779-34126366 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 263
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 59, 138

Conread position: 384-786
Cow position: chr6:40274686-40274282 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 262
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 133, 102

Conread position: 384-847
Cow position: chr6:28062779-28062325 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 54

Conread position: 384-847
Cow position: chr6:57870576-57871040 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 375

Conread position: 384-850
Cow position: chr6:332051-332517 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 106

Conread position: 384-850
Cow position: chr6:734604-734136 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 298
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 133, 128

Conread position: 384-850
Cow position: chr6:2374138-2373675 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 292
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 205, 80

Conread position: 384-850
Cow position: chr6:2554139-2553675 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 182

Conread position: 384-850
Cow position: chr6:7142036-7142498 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 69

Conread position: 384-850
Cow position: chr6:8444229-8444694 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 296
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 133, 128

Conread position: 384-850
Cow position: chr6:13846496-13846032 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 153

Conread position: 384-850
Cow position: chr6:26671437-26671904 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 370

Conread position: 384-850
Cow position: chr6:27169004-27168539 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 287
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 207, 242

Conread position: 384-850
Cow position: chr6:44028485-44028018 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 294
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 205, 376

Conread position: 384-850
Cow position: chr6:58409585-58410053 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 301
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 177, 193

Conread position: 384-850
Cow position: chr6:68026209-68025744 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 43

Conread position: 384-851
Cow position: chr6:17598852-17599316 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 68

Conread position: 384-1015
Cow position: chr6:6477001-6477616 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 48

Conread position: 386-850
Cow position: chr6:39907582-39907118 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 120

Conread position: 387-521
Cow position: chr6:7180201-7180335 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 387-540
Cow position: chr6:10054097-10053946 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 389-559
Cow position: chr6:65880316-65880143 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 111, 105

Conread position: 389-583
Cow position: chr6:8761995-8762191 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 123, 148

Conread position: 389-600
Cow position: chr6:35877261-35877481 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 89, 5

Conread position: 389-631
Cow position: chr6:40555154-40555399 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 167
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 97, 139

Conread position: 389-632
Cow position: chr6:34893551-34893799 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 123, 189

Conread position: 389-652
Cow position: chr6:701441-701171 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 180
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 75, 222

Conread position: 389-652
Cow position: chr6:29310824-29310555 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 182
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 34, 98

Conread position: 389-786
Cow position: chr6:65822674-65823072 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 259
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 200, 135

Conread position: 390-672
Cow position: chr6:28169544-28169251 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 194
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 92, 217

Conread position: 392-632
Cow position: chr6:3488939-3489180 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 173
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 120, 209

Conread position: 393-559
Cow position: chr6:27468719-27468549 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 87, 76

Conread position: 393-632
Cow position: chr6:27530543-27530784 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 119, 207

Conread position: 396-632
Cow position: chr6:52063-52301 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 116, 204

Conread position: 399-609
Cow position: chr6:42723901-42724114 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 46

Conread position: 453-812
Cow position: chr6:22852559-22852920 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 118

Conread position: 473-850
Cow position: chr6:1412140-1412517 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 235
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 116, 168

Conread position: 549-1018
Cow position: chr6:4904883-4905358 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 26

Conread position: 559-835
Cow position: chr6:65900762-65901034 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 204
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 46, 16

Conread position: 662-975
Cow position: chr6:47958290-47957996 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 23

Conread position: 705-1017
Cow position: chr6:26490846-26490524 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 239
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 95, 51

Conread position: 728-865
Cow position: chr6:6100801-6100938 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 96, 33

Show alignments to all cow chromosomes.