Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 364-651 |
| Cow position: | chr7:38536119-38535842 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 242, 19 |
| Conread position: | 369-649 |
| Cow position: | chr7:26890318-26890031 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 370-975 |
| Cow position: | chr7:53990321-53989715 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 13 |
| Conread position: | 370-1019 |
| Cow position: | chr7:29371197-29371843 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 12 |
| Conread position: | 372-521 |
| Cow position: | chr7:60857794-60857939 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 372-540 |
| Cow position: | chr7:47049989-47049826 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 372-606 |
| Cow position: | chr7:35288063-35288290 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 373-631 |
| Cow position: | chr7:21235449-21235706 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 143, 224 |
| Conread position: | 374-888 |
| Cow position: | chr7:3154339-3153831 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 113 |
| Conread position: | 375-675 |
| Cow position: | chr7:5661867-5661570 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 221, 72 |
| Conread position: | 382-509 |
| Cow position: | chr7:41489697-41489570 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-523 |
| Cow position: | chr7:49445852-49445716 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 382-562 |
| Cow position: | chr7:21242554-21242731 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 382-649 |
| Cow position: | chr7:21976363-21976629 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 46, 157 |
| Conread position: | 382-649 |
| Cow position: | chr7:35298012-35298272 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 382-852 |
| Cow position: | chr7:24421518-24421059 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 111 |
| Conread position: | 382-865 |
| Cow position: | chr7:51013524-51013037 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 164 |
| Conread position: | 382-1017 |
| Cow position: | chr7:30156748-30157378 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 140 |
| Conread position: | 382-1020 |
| Cow position: | chr7:67425930-67425284 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 81 |
| Conread position: | 383-500 |
| Cow position: | chr7:1358113-1358231 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 384-587 |
| Cow position: | chr7:7255809-7255606 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-592 |
| Cow position: | chr7:48632951-48632746 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 62 |
| Conread position: | 384-621 |
| Cow position: | chr7:67416623-67416387 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 54, 154 |
| Conread position: | 384-631 |
| Cow position: | chr7:14140042-14140290 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 141, 215 |
| Conread position: | 384-631 |
| Cow position: | chr7:38396777-38396526 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 74, 217 |
| Conread position: | 384-631 |
| Cow position: | chr7:55538365-55538621 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 102, 223 |
| Conread position: | 384-631 |
| Cow position: | chr7:64242386-64242633 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 129, 15 |
| Conread position: | 384-632 |
| Cow position: | chr7:447069-447320 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 128, 217 |
| Conread position: | 384-632 |
| Cow position: | chr7:1373098-1373349 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 128, 217 |
| Conread position: | 384-632 |
| Cow position: | chr7:21984950-21984704 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 128, 188 |
| Conread position: | 384-632 |
| Cow position: | chr7:34148659-34148412 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 134, 212 |
| Conread position: | 384-632 |
| Cow position: | chr7:46902523-46902759 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 130, 38 |
| Conread position: | 384-635 |
| Cow position: | chr7:63384871-63384619 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 216, 186 |
| Conread position: | 384-636 |
| Cow position: | chr7:33406659-33406903 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 135, 46 |
| Conread position: | 384-639 |
| Cow position: | chr7:10431836-10432096 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 105, 219 |
| Conread position: | 384-649 |
| Cow position: | chr7:993821-993573 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 384-652 |
| Cow position: | chr7:13538177-13538449 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 94, 218 |
| Conread position: | 384-652 |
| Cow position: | chr7:54602399-54602130 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 128, 37 |
| Conread position: | 384-689 |
| Cow position: | chr7:20302973-20302664 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-735 |
| Cow position: | chr7:521665-521309 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 59, 126 |
| Conread position: | 384-786 |
| Cow position: | chr7:27102593-27102995 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 374 |
| Conread position: | 384-846 |
| Cow position: | chr7:61558731-61558268 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 189, 209 |
| Conread position: | 384-850 |
| Cow position: | chr7:17353-17820 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 297 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 207, 256 |
| Conread position: | 384-850 |
| Cow position: | chr7:6649136-6649602 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 218, 274 |
| Conread position: | 384-850 |
| Cow position: | chr7:6720065-6719615 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 292 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 384-850 |
| Cow position: | chr7:20529178-20529627 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 384-850 |
| Cow position: | chr7:20555214-20554746 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 189, 209 |
| Conread position: | 384-850 |
| Cow position: | chr7:26025579-26025115 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 102 |
| Conread position: | 384-851 |
| Cow position: | chr7:20799898-20800359 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 69 |
| Conread position: | 384-851 |
| Cow position: | chr7:68858779-68859239 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 131 |
| Conread position: | 384-852 |
| Cow position: | chr7:27536848-27537315 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 267 |
| Conread position: | 384-1020 |
| Cow position: | chr7:21251669-21252318 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 140 |
| Conread position: | 385-849 |
| Cow position: | chr7:11467209-11467674 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 375 |
| Conread position: | 385-850 |
| Cow position: | chr7:6643356-6643816 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 131, 127 |
| Conread position: | 389-541 |
| Cow position: | chr7:19927032-19927185 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 111, 103 |
| Conread position: | 389-597 |
| Cow position: | chr7:27786178-27785964 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 111, 105 |
| Conread position: | 389-617 |
| Cow position: | chr7:24808922-24809159 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 125, 217 |
| Conread position: | 389-623 |
| Cow position: | chr7:67798402-67798166 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 111, 103 |
| Conread position: | 389-632 |
| Cow position: | chr7:759990-760233 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 111, 5 |
| Conread position: | 391-711 |
| Cow position: | chr7:68779314-68779627 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 173 |
| Conread position: | 393-629 |
| Cow position: | chr7:52120532-52120764 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 145 |
| Conread position: | 396-540 |
| Cow position: | chr7:27143874-27143731 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 86, 91 |
| Conread position: | 396-540 |
| Cow position: | chr7:31864410-31864273 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 396-631 |
| Cow position: | chr7:51912036-51912273 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 116, 62 |
| Conread position: | 400-844 |
| Cow position: | chr7:112058-111611 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 56, 246 |
| Conread position: | 401-624 |
| Cow position: | chr7:20294125-20293899 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 110, 200 |
| Conread position: | 412-598 |
| Cow position: | chr7:21309720-21309544 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 413-649 |
| Cow position: | chr7:39641324-39641559 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 550-852 |
| Cow position: | chr7:20431164-20431468 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 25 |
| Conread position: | 554-783 |
| Cow position: | chr7:47049207-47048975 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 646-975 |
| Cow position: | chr7:35288268-35288580 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 218, 98 |
| Conread position: | 647-1029 |
| Cow position: | chr7:63020010-63019616 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 207, 110 |
| Conread position: | 648-1017 |
| Cow position: | chr7:21242864-21243240 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 110 |
| Conread position: | 660-1017 |
| Cow position: | chr7:24934903-24935262 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 184, 23 |
| Conread position: | 716-868 |
| Cow position: | chr7:64394709-64394560 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 137, 16 |
| Conread position: | 737-848 |
| Cow position: | chr7:68779623-68779732 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.