Cow genome map
| Conread name: | Ss1.1-Thy1-THY010003G05.5 |
| Conread position: | 363-844 |
| Cow position: | chr9:45872733-45872243 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 92 |
| Conread position: | 372-538 |
| Cow position: | chr9:34107454-34107619 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 11 |
| Conread position: | 372-651 |
| Cow position: | chr9:651666-651953 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 372-651 |
| Cow position: | chr9:34991064-34990800 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 375-632 |
| Cow position: | chr9:18510325-18510581 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 137, 29 |
| Conread position: | 380-648 |
| Cow position: | chr9:31020221-31019935 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 46, 61 |
| Conread position: | 382-520 |
| Cow position: | chr9:13219756-13219618 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 382-604 |
| Cow position: | chr9:54359998-54359784 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 382-767 |
| Cow position: | chr9:59443220-59442841 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 104 |
| Conread position: | 383-632 |
| Cow position: | chr9:31806931-31806678 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 45, 219 |
| Conread position: | 383-649 |
| Cow position: | chr9:10314794-10314536 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 384-520 |
| Cow position: | chr9:20310328-20310462 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 384-538 |
| Cow position: | chr9:4984166-4984017 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 384-540 |
| Cow position: | chr9:26237515-26237361 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 384-562 |
| Cow position: | chr9:42568263-42568081 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 384-594 |
| Cow position: | chr9:28626613-28626820 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 384-602 |
| Cow position: | chr9:1294494-1294710 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 384-631 |
| Cow position: | chr9:3548780-3549029 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 384-631 |
| Cow position: | chr9:10855589-10855335 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 116, 110 |
| Conread position: | 384-631 |
| Cow position: | chr9:51183318-51183574 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 128, 225 |
| Conread position: | 384-632 |
| Cow position: | chr9:1996522-1996769 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 98 |
| Conread position: | 384-632 |
| Cow position: | chr9:6249539-6249291 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 128, 60 |
| Conread position: | 384-632 |
| Cow position: | chr9:7001944-7001693 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 130, 45 |
| Conread position: | 384-632 |
| Cow position: | chr9:10321217-10320967 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 128, 214 |
| Conread position: | 384-632 |
| Cow position: | chr9:16175155-16174910 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 134, 28 |
| Conread position: | 384-632 |
| Cow position: | chr9:22650314-22650063 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 384-632 |
| Cow position: | chr9:28020937-28020688 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 384-632 |
| Cow position: | chr9:30671761-30671505 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 94, 222 |
| Conread position: | 384-632 |
| Cow position: | chr9:32967872-32967617 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 128, 221 |
| Conread position: | 384-632 |
| Cow position: | chr9:37163417-37163665 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 140, 68 |
| Conread position: | 384-632 |
| Cow position: | chr9:47001603-47001360 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 116, 110 |
| Conread position: | 384-632 |
| Cow position: | chr9:59456209-59456458 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 129, 18 |
| Conread position: | 384-634 |
| Cow position: | chr9:6051647-6051900 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 127, 217 |
| Conread position: | 384-634 |
| Cow position: | chr9:9012498-9012251 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 128, 85 |
| Conread position: | 384-649 |
| Cow position: | chr9:8969644-8969914 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 239, 168 |
| Conread position: | 384-651 |
| Cow position: | chr9:3155463-3155200 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 234, 46 |
| Conread position: | 384-651 |
| Cow position: | chr9:15071924-15071659 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 222, 152 |
| Conread position: | 384-652 |
| Cow position: | chr9:418137-418408 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 98, 154 |
| Conread position: | 384-652 |
| Cow position: | chr9:6831153-6831417 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 131, 147 |
| Conread position: | 384-652 |
| Cow position: | chr9:10936952-10936686 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 127, 189 |
| Conread position: | 384-652 |
| Cow position: | chr9:60279174-60279445 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 116, 219 |
| Conread position: | 384-653 |
| Cow position: | chr9:29629357-29629630 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 134, 218 |
| Conread position: | 384-655 |
| Cow position: | chr9:59174767-59175038 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 384-690 |
| Cow position: | chr9:164318-164628 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-694 |
| Cow position: | chr9:832043-832367 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 159 |
| Conread position: | 384-722 |
| Cow position: | chr9:46626440-46626781 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 384-724 |
| Cow position: | chr9:1076840-1077176 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 212, 255 |
| Conread position: | 384-724 |
| Cow position: | chr9:34243241-34243584 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 384-786 |
| Cow position: | chr9:27933451-27933047 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 376 |
| Conread position: | 384-797 |
| Cow position: | chr9:17065029-17065444 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 81 |
| Conread position: | 384-846 |
| Cow position: | chr9:25755849-25756308 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 207, 80 |
| Conread position: | 384-847 |
| Cow position: | chr9:781442-781906 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 289 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 205, 376 |
| Conread position: | 384-850 |
| Cow position: | chr9:1252593-1253055 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 133, 21 |
| Conread position: | 384-850 |
| Cow position: | chr9:2067712-2068183 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 305 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 126, 98 |
| Conread position: | 384-850 |
| Cow position: | chr9:2488601-2489070 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 381 |
| Conread position: | 384-850 |
| Cow position: | chr9:3006915-3007376 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 306 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 52, 142 |
| Conread position: | 384-850 |
| Cow position: | chr9:12401604-12401143 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 297 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 133, 38 |
| Conread position: | 384-850 |
| Cow position: | chr9:16267718-16267250 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 299 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-850 |
| Cow position: | chr9:25483199-25482733 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-850 |
| Cow position: | chr9:28677046-28676579 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 376 |
| Conread position: | 384-850 |
| Cow position: | chr9:31194810-31195268 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 301 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 133, 20 |
| Conread position: | 384-850 |
| Cow position: | chr9:50788926-50788446 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 311 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 63, 223 |
| Conread position: | 384-850 |
| Cow position: | chr9:51201559-51201091 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-850 |
| Cow position: | chr9:51210724-51210256 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 299 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 133, 128 |
| Conread position: | 384-861 |
| Cow position: | chr9:36723574-36723101 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 133, 107 |
| Conread position: | 384-1017 |
| Cow position: | chr9:3802901-3802267 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 38 |
| Conread position: | 385-850 |
| Cow position: | chr9:33834915-33835381 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 295 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 132, 127 |
| Conread position: | 386-850 |
| Cow position: | chr9:4671964-4671500 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 151 |
| Conread position: | 387-540 |
| Cow position: | chr9:64118249-64118102 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 389-549 |
| Cow position: | chr9:42309067-42308903 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 389-624 |
| Cow position: | chr9:2199501-2199263 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 111, 97 |
| Conread position: | 389-631 |
| Cow position: | chr9:59483279-59483524 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 111, 103 |
| Conread position: | 389-631 |
| Cow position: | chr9:59535490-59535243 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 111, 105 |
| Conread position: | 389-632 |
| Cow position: | chr9:4531580-4531336 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 122, 210 |
| Conread position: | 389-758 |
| Cow position: | chr9:132553-132922 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 390-651 |
| Cow position: | chr9:37130132-37130392 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 393-631 |
| Cow position: | chr9:37971827-37972067 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 119, 207 |
| Conread position: | 393-634 |
| Cow position: | chr9:2170438-2170192 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 118, 34 |
| Conread position: | 396-540 |
| Cow position: | chr9:8166835-8166977 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 422-757 |
| Cow position: | chr9:46158728-46159056 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 226, 18 |
| Conread position: | 451-1017 |
| Cow position: | chr9:18002570-18002021 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 86 |
| Conread position: | 458-770 |
| Cow position: | chr9:2501042-2501352 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 138, 11 |
| Conread position: | 560-852 |
| Cow position: | chr9:11321701-11321416 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 7 |
| Conread position: | 619-1020 |
| Cow position: | chr9:13219400-13218962 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 300 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 152, 138 |
| Conread position: | 736-1012 |
| Cow position: | chr9:832379-832658 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 118, 23 |
Show alignments to all cow chromosomes.