Cow genome map
Conread name: | Ss1.1-Thy1-THY010030C01.5 |
Conread position: | 179-653 |
Cow position: | chr1:15984099-15983649 (view UCSC Genome Browser custom track) |
Alignm length: | 478 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 129, 74 |
Conread position: | 185-509 |
Cow position: | chr1:8447206-8446896 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 219 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 17, 27 |
Conread position: | 188-670 |
Cow position: | chr1:85001124-85000653 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 116 |
Conread position: | 189-459 |
Cow position: | chr1:14169837-14169575 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 185 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 117, 22 |
Conread position: | 194-361 |
Cow position: | chr1:87740872-87741037 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 132 |
Alignm E-value: | 8e-28 |
Alignm gaps (pig, cow): | 64, 7 |
Conread position: | 194-544 |
Cow position: | chr1:80969026-80968683 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 243 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 13, 146 |
Conread position: | 196-663 |
Cow position: | chr1:6309666-6309218 (view UCSC Genome Browser custom track) |
Alignm length: | 471 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 124 |
Conread position: | 199-663 |
Cow position: | chr1:89407672-89407232 (view UCSC Genome Browser custom track) |
Alignm length: | 471 |
Alignm identity: | 320 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 31, 21 |
Conread position: | 200-611 |
Cow position: | chr1:24684692-24684304 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 137 |
Conread position: | 201-656 |
Cow position: | chr1:94409383-94408937 (view UCSC Genome Browser custom track) |
Alignm length: | 471 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 35 |
Conread position: | 202-615 |
Cow position: | chr1:94390392-94390780 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 143 |
Conread position: | 202-669 |
Cow position: | chr1:81454181-81454653 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 354 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 215 |
Conread position: | 204-470 |
Cow position: | chr1:78259614-78259330 (view UCSC Genome Browser custom track) |
Alignm length: | 286 |
Alignm identity: | 213 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 13, 130 |
Conread position: | 204-472 |
Cow position: | chr1:13850952-13850690 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 185 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 14, 143 |
Conread position: | 204-547 |
Cow position: | chr1:69239769-69240108 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 234 |
Alignm E-value: | 6e-26 |
Alignm gaps (pig, cow): | 10, 28 |
Conread position: | 204-561 |
Cow position: | chr1:80175238-80174892 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 135 |
Conread position: | 204-598 |
Cow position: | chr1:93391655-93392031 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 23 |
Conread position: | 204-660 |
Cow position: | chr1:57854125-57854592 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 142 |
Conread position: | 204-663 |
Cow position: | chr1:46388947-46389401 (view UCSC Genome Browser custom track) |
Alignm length: | 471 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 117 |
Conread position: | 204-663 |
Cow position: | chr1:71086677-71087120 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 119 |
Conread position: | 204-663 |
Cow position: | chr1:94744518-94744958 (view UCSC Genome Browser custom track) |
Alignm length: | 463 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 14 |
Conread position: | 204-663 |
Cow position: | chr1:100045722-100046173 (view UCSC Genome Browser custom track) |
Alignm length: | 470 |
Alignm identity: | 314 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 102, 18 |
Conread position: | 204-682 |
Cow position: | chr1:20807372-20806884 (view UCSC Genome Browser custom track) |
Alignm length: | 497 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 316 |
Conread position: | 205-675 |
Cow position: | chr1:57562614-57563072 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 147 |
Conread position: | 206-542 |
Cow position: | chr1:70177927-70178269 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 94 |
Conread position: | 206-544 |
Cow position: | chr1:33914526-33914201 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 5 |
Conread position: | 206-615 |
Cow position: | chr1:13992223-13992619 (view UCSC Genome Browser custom track) |
Alignm length: | 413 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 122 |
Conread position: | 206-661 |
Cow position: | chr1:43588296-43588732 (view UCSC Genome Browser custom track) |
Alignm length: | 464 |
Alignm identity: | 317 |
Alignm E-value: | 5.04467e-44 |
Alignm gaps (pig, cow): | 60, 5 |
Conread position: | 206-663 |
Cow position: | chr1:67902497-67902058 (view UCSC Genome Browser custom track) |
Alignm length: | 463 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 115 |
Conread position: | 206-688 |
Cow position: | chr1:65187433-65187899 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 13 |
Conread position: | 207-496 |
Cow position: | chr1:40415332-40415613 (view UCSC Genome Browser custom track) |
Alignm length: | 296 |
Alignm identity: | 207 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 11, 121 |
Conread position: | 207-613 |
Cow position: | chr1:7489525-7489137 (view UCSC Genome Browser custom track) |
Alignm length: | 412 |
Alignm identity: | 283 |
Alignm E-value: | 3.99931e-42 |
Alignm gaps (pig, cow): | 11, 114 |
Conread position: | 207-660 |
Cow position: | chr1:31127211-31126750 (view UCSC Genome Browser custom track) |
Alignm length: | 469 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 26 |
Conread position: | 207-663 |
Cow position: | chr1:61606270-61606706 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 113 |
Conread position: | 208-552 |
Cow position: | chr1:86643385-86643055 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 73 |
Conread position: | 208-670 |
Cow position: | chr1:23086753-23086290 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 354 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 36 |
Conread position: | 209-659 |
Cow position: | chr1:55114350-55114776 (view UCSC Genome Browser custom track) |
Alignm length: | 454 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 153, 30 |
Conread position: | 210-648 |
Cow position: | chr1:70099537-70099109 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 284 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 97, 131 |
Conread position: | 210-672 |
Cow position: | chr1:84760905-84760474 (view UCSC Genome Browser custom track) |
Alignm length: | 466 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 345, 10 |
Conread position: | 211-354 |
Cow position: | chr1:82420193-82420337 (view UCSC Genome Browser custom track) |
Alignm length: | 145 |
Alignm identity: | 110 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 95, 0 |
Conread position: | 211-514 |
Cow position: | chr1:57220706-57220414 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 222 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 93, 109 |
Conread position: | 211-546 |
Cow position: | chr1:12569044-12568708 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 231 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 97, 135 |
Conread position: | 211-614 |
Cow position: | chr1:35544706-35544321 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 34 |
Conread position: | 211-615 |
Cow position: | chr1:41607095-41607524 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 296 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 97, 203 |
Conread position: | 211-668 |
Cow position: | chr1:40377772-40378209 (view UCSC Genome Browser custom track) |
Alignm length: | 464 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 356, 95 |
Conread position: | 211-668 |
Cow position: | chr1:88973459-88972994 (view UCSC Genome Browser custom track) |
Alignm length: | 474 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 25 |
Conread position: | 211-670 |
Cow position: | chr1:31979293-31978848 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 133 |
Conread position: | 211-670 |
Cow position: | chr1:92708794-92709243 (view UCSC Genome Browser custom track) |
Alignm length: | 464 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 72 |
Conread position: | 211-672 |
Cow position: | chr1:8142654-8143096 (view UCSC Genome Browser custom track) |
Alignm length: | 471 |
Alignm identity: | 317 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 47, 32 |
Conread position: | 211-672 |
Cow position: | chr1:12521644-12521167 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 135 |
Conread position: | 211-682 |
Cow position: | chr1:100397226-100397676 (view UCSC Genome Browser custom track) |
Alignm length: | 476 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 116 |
Conread position: | 212-530 |
Cow position: | chr1:23832306-23832623 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 212 |
Alignm E-value: | 5e-24 |
Alignm gaps (pig, cow): | 34, 20 |
Conread position: | 212-647 |
Cow position: | chr1:20264904-20264473 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 134 |
Conread position: | 212-660 |
Cow position: | chr1:24509267-24509699 (view UCSC Genome Browser custom track) |
Alignm length: | 450 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 96, 59 |
Conread position: | 213-648 |
Cow position: | chr1:6968392-6968826 (view UCSC Genome Browser custom track) |
Alignm length: | 442 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 7 |
Conread position: | 213-653 |
Cow position: | chr1:14383380-14382944 (view UCSC Genome Browser custom track) |
Alignm length: | 451 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 82 |
Conread position: | 213-680 |
Cow position: | chr1:81491123-81491573 (view UCSC Genome Browser custom track) |
Alignm length: | 469 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 152, 97 |
Conread position: | 215-563 |
Cow position: | chr1:4264984-4264623 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 258 |
Alignm E-value: | 8.99999e-40 |
Alignm gaps (pig, cow): | 93, 22 |
Conread position: | 220-472 |
Cow position: | chr1:26512020-26511773 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 169 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 86, 127 |
Conread position: | 220-613 |
Cow position: | chr1:70171818-70171447 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 268 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 86, 94 |
Conread position: | 220-657 |
Cow position: | chr1:17092053-17092500 (view UCSC Genome Browser custom track) |
Alignm length: | 457 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 24 |
Conread position: | 234-569 |
Cow position: | chr1:23921132-23920791 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 217 |
Conread position: | 234-683 |
Cow position: | chr1:13738303-13737884 (view UCSC Genome Browser custom track) |
Alignm length: | 452 |
Alignm identity: | 312 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 74, 87 |
Conread position: | 238-668 |
Cow position: | chr1:57357077-57357499 (view UCSC Genome Browser custom track) |
Alignm length: | 437 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 90 |
Conread position: | 244-647 |
Cow position: | chr1:39639057-39638669 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 283 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 89, 122 |
Conread position: | 245-690 |
Cow position: | chr1:89915560-89915995 (view UCSC Genome Browser custom track) |
Alignm length: | 449 |
Alignm identity: | 331 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 94 |
Conread position: | 247-666 |
Cow position: | chr1:60859920-60860350 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 98 |
Conread position: | 250-670 |
Cow position: | chr1:61554397-61553974 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 78 |
Conread position: | 252-660 |
Cow position: | chr1:13681315-13680892 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 289 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 56, 80 |
Conread position: | 258-570 |
Cow position: | chr1:94761642-94761343 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 219 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 48, 80 |
Conread position: | 272-628 |
Cow position: | chr1:99249495-99249849 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 254 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 36, 72 |
Conread position: | 278-539 |
Cow position: | chr1:100389096-100389348 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 182 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 31, 54 |
Conread position: | 285-657 |
Cow position: | chr1:13575210-13574853 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 256 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 23, 62 |
Conread position: | 288-663 |
Cow position: | chr1:24764117-24763762 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 254 |
Alignm E-value: | 6e-36 |
Alignm gaps (pig, cow): | 18, 33 |
Conread position: | 362-660 |
Cow position: | chr1:90845602-90845315 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 0 |
Conread position: | 364-681 |
Cow position: | chr1:69702898-69703204 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 0 |
Conread position: | 402-668 |
Cow position: | chr1:4279783-4279524 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 204 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 168, 82 |
Conread position: | 402-668 |
Cow position: | chr1:57893279-57893556 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 210 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 114, 80 |
Conread position: | 403-672 |
Cow position: | chr1:83321681-83321411 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 221 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 6, 105 |
Conread position: | 412-668 |
Cow position: | chr1:13313924-13314171 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 195 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 140, 70 |
Conread position: | 413-563 |
Cow position: | chr1:41972987-41972841 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 118 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 10, 15 |
Conread position: | 418-660 |
Cow position: | chr1:28329841-28329607 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 185 |
Alignm E-value: | 7e-37 |
Alignm gaps (pig, cow): | 79, 16 |
Conread position: | 418-670 |
Cow position: | chr1:57776395-57776647 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 194 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 75, 15 |
Conread position: | 426-670 |
Cow position: | chr1:64753277-64753519 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 174, 0 |
Conread position: | 432-672 |
Cow position: | chr1:35393438-35393207 (view UCSC Genome Browser custom track) |
Alignm length: | 242 |
Alignm identity: | 172 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 61, 75 |
Conread position: | 440-670 |
Cow position: | chr1:93244696-93244920 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 178 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 57, 74 |
Conread position: | 454-659 |
Cow position: | chr1:58303534-58303734 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 151 |
Alignm E-value: | 8e-28 |
Alignm gaps (pig, cow): | 89, 28 |
Conread position: | 460-681 |
Cow position: | chr1:80275840-80275625 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 165 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 468-666 |
Cow position: | chr1:26511491-26511296 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 147 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 35, 45 |
Conread position: | 490-649 |
Cow position: | chr1:40878023-40877870 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 130 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.