Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 179-653 |
| Cow position: | |
| Alignm length: | 478 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 74 |
| Conread position: | 185-509 |
| Cow position: | |
| Alignm length: | 329 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 188-670 |
| Cow position: | |
| Alignm length: | 487 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 116 |
| Conread position: | 189-459 |
| Cow position: | |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 117, 22 |
| Conread position: | 194-361 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 64, 7 |
| Conread position: | 194-544 |
| Cow position: | |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 196-663 |
| Cow position: | |
| Alignm length: | 471 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 124 |
| Conread position: | 199-663 |
| Cow position: | |
| Alignm length: | 471 |
| Alignm identity: | 320 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 31, 21 |
| Conread position: | 200-611 |
| Cow position: | |
| Alignm length: | 415 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 137 |
| Conread position: | 201-656 |
| Cow position: | |
| Alignm length: | 471 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 202-615 |
| Cow position: | |
| Alignm length: | 415 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 143 |
| Conread position: | 202-669 |
| Cow position: | |
| Alignm length: | 487 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 215 |
| Conread position: | 204-470 |
| Cow position: | |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 13, 130 |
| Conread position: | 204-472 |
| Cow position: | |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 143 |
| Conread position: | 204-547 |
| Cow position: | |
| Alignm length: | 353 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 204-561 |
| Cow position: | |
| Alignm length: | 360 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 135 |
| Conread position: | 204-598 |
| Cow position: | |
| Alignm length: | 398 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 204-660 |
| Cow position: | |
| Alignm length: | 477 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 142 |
| Conread position: | 204-663 |
| Cow position: | |
| Alignm length: | 471 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 117 |
| Conread position: | 204-663 |
| Cow position: | |
| Alignm length: | 465 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 119 |
| Conread position: | 204-663 |
| Cow position: | |
| Alignm length: | 463 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 14 |
| Conread position: | 204-663 |
| Cow position: | |
| Alignm length: | 470 |
| Alignm identity: | 314 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 102, 18 |
| Conread position: | 204-682 |
| Cow position: | |
| Alignm length: | 497 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 316 |
| Conread position: | 205-675 |
| Cow position: | |
| Alignm length: | 475 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 147 |
| Conread position: | 206-542 |
| Cow position: | |
| Alignm length: | 353 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 94 |
| Conread position: | 206-544 |
| Cow position: | |
| Alignm length: | 341 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 5 |
| Conread position: | 206-615 |
| Cow position: | |
| Alignm length: | 413 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 122 |
| Conread position: | 206-661 |
| Cow position: | |
| Alignm length: | 464 |
| Alignm identity: | 317 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 60, 5 |
| Conread position: | 206-663 |
| Cow position: | |
| Alignm length: | 463 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 115 |
| Conread position: | 206-688 |
| Cow position: | |
| Alignm length: | 485 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 13 |
| Conread position: | 207-496 |
| Cow position: | |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 11, 121 |
| Conread position: | 207-613 |
| Cow position: | |
| Alignm length: | 412 |
| Alignm identity: | 283 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 11, 114 |
| Conread position: | 207-660 |
| Cow position: | |
| Alignm length: | 469 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 26 |
| Conread position: | 207-663 |
| Cow position: | |
| Alignm length: | 462 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 113 |
| Conread position: | 208-552 |
| Cow position: | |
| Alignm length: | 347 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 73 |
| Conread position: | 208-670 |
| Cow position: | |
| Alignm length: | 479 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 36 |
| Conread position: | 209-659 |
| Cow position: | |
| Alignm length: | 454 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 30 |
| Conread position: | 210-648 |
| Cow position: | |
| Alignm length: | 445 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 97, 131 |
| Conread position: | 210-672 |
| Cow position: | |
| Alignm length: | 466 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 10 |
| Conread position: | 211-354 |
| Cow position: | |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 211-514 |
| Cow position: | |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 93, 109 |
| Conread position: | 211-546 |
| Cow position: | |
| Alignm length: | 341 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 97, 135 |
| Conread position: | 211-614 |
| Cow position: | |
| Alignm length: | 406 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 34 |
| Conread position: | 211-615 |
| Cow position: | |
| Alignm length: | 432 |
| Alignm identity: | 296 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 97, 203 |
| Conread position: | 211-668 |
| Cow position: | |
| Alignm length: | 464 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 95 |
| Conread position: | 211-668 |
| Cow position: | |
| Alignm length: | 474 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 211-670 |
| Cow position: | |
| Alignm length: | 462 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 133 |
| Conread position: | 211-670 |
| Cow position: | |
| Alignm length: | 464 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 72 |
| Conread position: | 211-672 |
| Cow position: | |
| Alignm length: | 471 |
| Alignm identity: | 317 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 211-672 |
| Cow position: | |
| Alignm length: | 482 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 135 |
| Conread position: | 211-682 |
| Cow position: | |
| Alignm length: | 476 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 116 |
| Conread position: | 212-530 |
| Cow position: | |
| Alignm length: | 326 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 212-647 |
| Cow position: | |
| Alignm length: | 438 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 134 |
| Conread position: | 212-660 |
| Cow position: | |
| Alignm length: | 450 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 59 |
| Conread position: | 213-648 |
| Cow position: | |
| Alignm length: | 442 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 7 |
| Conread position: | 213-653 |
| Cow position: | |
| Alignm length: | 451 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 82 |
| Conread position: | 213-680 |
| Cow position: | |
| Alignm length: | 469 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 97 |
| Conread position: | 215-563 |
| Cow position: | |
| Alignm length: | 370 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 93, 22 |
| Conread position: | 220-472 |
| Cow position: | |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 86, 127 |
| Conread position: | 220-613 |
| Cow position: | |
| Alignm length: | 397 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 86, 94 |
| Conread position: | 220-657 |
| Cow position: | |
| Alignm length: | 457 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 24 |
| Conread position: | 234-569 |
| Cow position: | |
| Alignm length: | 356 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 217 |
| Conread position: | 234-683 |
| Cow position: | |
| Alignm length: | 452 |
| Alignm identity: | 312 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 74, 87 |
| Conread position: | 238-668 |
| Cow position: | |
| Alignm length: | 437 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 90 |
| Conread position: | 244-647 |
| Cow position: | |
| Alignm length: | 410 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 89, 122 |
| Conread position: | 245-690 |
| Cow position: | |
| Alignm length: | 449 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 94 |
| Conread position: | 247-666 |
| Cow position: | |
| Alignm length: | 438 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 98 |
| Conread position: | 250-670 |
| Cow position: | |
| Alignm length: | 435 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 78 |
| Conread position: | 252-660 |
| Cow position: | |
| Alignm length: | 430 |
| Alignm identity: | 289 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 56, 80 |
| Conread position: | 258-570 |
| Cow position: | |
| Alignm length: | 316 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 48, 80 |
| Conread position: | 272-628 |
| Cow position: | |
| Alignm length: | 367 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 278-539 |
| Cow position: | |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 54 |
| Conread position: | 285-657 |
| Cow position: | |
| Alignm length: | 374 |
| Alignm identity: | 256 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 288-663 |
| Cow position: | |
| Alignm length: | 377 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 362-660 |
| Cow position: | |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 364-681 |
| Cow position: | |
| Alignm length: | 318 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 402-668 |
| Cow position: | |
| Alignm length: | 268 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 82 |
| Conread position: | 402-668 |
| Cow position: | |
| Alignm length: | 280 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 114, 80 |
| Conread position: | 403-672 |
| Cow position: | |
| Alignm length: | 272 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 105 |
| Conread position: | 412-668 |
| Cow position: | |
| Alignm length: | 259 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 140, 70 |
| Conread position: | 413-563 |
| Cow position: | |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 418-660 |
| Cow position: | |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 79, 16 |
| Conread position: | 418-670 |
| Cow position: | |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 75, 15 |
| Conread position: | 426-670 |
| Cow position: | |
| Alignm length: | 245 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 432-672 |
| Cow position: | |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 440-670 |
| Cow position: | |
| Alignm length: | 232 |
| Alignm identity: | 178 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 57, 74 |
| Conread position: | 454-659 |
| Cow position: | |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 460-681 |
| Cow position: | |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 468-666 |
| Cow position: | |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 35, 45 |
| Conread position: | 490-649 |
| Cow position: | |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.