Cow genome map

Conread name: Ss1.1-Thy1-THY010030C01.5

Conread position: 179-653
Cow position: chr1:15984099-15983649 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 74

Conread position: 185-509
Cow position: chr1:8447206-8446896 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 219
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 17, 27

Conread position: 188-670
Cow position: chr1:85001124-85000653 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 116

Conread position: 189-459
Cow position: chr1:14169837-14169575 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 185
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 117, 22

Conread position: 194-361
Cow position: chr1:87740872-87741037 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 64, 7

Conread position: 194-544
Cow position: chr1:80969026-80968683 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 243
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 13, 146

Conread position: 196-663
Cow position: chr1:6309666-6309218 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 124

Conread position: 199-663
Cow position: chr1:89407672-89407232 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 320
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 31, 21

Conread position: 200-611
Cow position: chr1:24684692-24684304 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 137

Conread position: 201-656
Cow position: chr1:94409383-94408937 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 35

Conread position: 202-615
Cow position: chr1:94390392-94390780 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 143

Conread position: 202-669
Cow position: chr1:81454181-81454653 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 215

Conread position: 204-470
Cow position: chr1:78259614-78259330 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 213
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 13, 130

Conread position: 204-472
Cow position: chr1:13850952-13850690 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 185
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 143

Conread position: 204-547
Cow position: chr1:69239769-69240108 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 234
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 10, 28

Conread position: 204-561
Cow position: chr1:80175238-80174892 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 135

Conread position: 204-598
Cow position: chr1:93391655-93392031 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 23

Conread position: 204-660
Cow position: chr1:57854125-57854592 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 142

Conread position: 204-663
Cow position: chr1:46388947-46389401 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 117

Conread position: 204-663
Cow position: chr1:71086677-71087120 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 119

Conread position: 204-663
Cow position: chr1:94744518-94744958 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 14

Conread position: 204-663
Cow position: chr1:100045722-100046173 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 314
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 102, 18

Conread position: 204-682
Cow position: chr1:20807372-20806884 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 316

Conread position: 205-675
Cow position: chr1:57562614-57563072 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 147

Conread position: 206-542
Cow position: chr1:70177927-70178269 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 94

Conread position: 206-544
Cow position: chr1:33914526-33914201 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 5

Conread position: 206-615
Cow position: chr1:13992223-13992619 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 122

Conread position: 206-661
Cow position: chr1:43588296-43588732 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 317
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 60, 5

Conread position: 206-663
Cow position: chr1:67902497-67902058 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 115

Conread position: 206-688
Cow position: chr1:65187433-65187899 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 13

Conread position: 207-496
Cow position: chr1:40415332-40415613 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 207
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 11, 121

Conread position: 207-613
Cow position: chr1:7489525-7489137 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 283
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 11, 114

Conread position: 207-660
Cow position: chr1:31127211-31126750 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 26

Conread position: 207-663
Cow position: chr1:61606270-61606706 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 113

Conread position: 208-552
Cow position: chr1:86643385-86643055 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 73

Conread position: 208-670
Cow position: chr1:23086753-23086290 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 36

Conread position: 209-659
Cow position: chr1:55114350-55114776 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 30

Conread position: 210-648
Cow position: chr1:70099537-70099109 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 284
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 97, 131

Conread position: 210-672
Cow position: chr1:84760905-84760474 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 345, 10

Conread position: 211-354
Cow position: chr1:82420193-82420337 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 95, 0

Conread position: 211-514
Cow position: chr1:57220706-57220414 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 93, 109

Conread position: 211-546
Cow position: chr1:12569044-12568708 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 231
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 97, 135

Conread position: 211-614
Cow position: chr1:35544706-35544321 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 34

Conread position: 211-615
Cow position: chr1:41607095-41607524 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 296
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 97, 203

Conread position: 211-668
Cow position: chr1:40377772-40378209 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 95

Conread position: 211-668
Cow position: chr1:88973459-88972994 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 25

Conread position: 211-670
Cow position: chr1:31979293-31978848 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 133

Conread position: 211-670
Cow position: chr1:92708794-92709243 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 72

Conread position: 211-672
Cow position: chr1:8142654-8143096 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 317
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 47, 32

Conread position: 211-672
Cow position: chr1:12521644-12521167 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 135

Conread position: 211-682
Cow position: chr1:100397226-100397676 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 116

Conread position: 212-530
Cow position: chr1:23832306-23832623 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 212
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 34, 20

Conread position: 212-647
Cow position: chr1:20264904-20264473 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 134

Conread position: 212-660
Cow position: chr1:24509267-24509699 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 59

Conread position: 213-648
Cow position: chr1:6968392-6968826 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 7

Conread position: 213-653
Cow position: chr1:14383380-14382944 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 82

Conread position: 213-680
Cow position: chr1:81491123-81491573 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 97

Conread position: 215-563
Cow position: chr1:4264984-4264623 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 258
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 93, 22

Conread position: 220-472
Cow position: chr1:26512020-26511773 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 169
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 86, 127

Conread position: 220-613
Cow position: chr1:70171818-70171447 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 268
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 86, 94

Conread position: 220-657
Cow position: chr1:17092053-17092500 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 24

Conread position: 234-569
Cow position: chr1:23921132-23920791 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 217

Conread position: 234-683
Cow position: chr1:13738303-13737884 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 312
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 74, 87

Conread position: 238-668
Cow position: chr1:57357077-57357499 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 90

Conread position: 244-647
Cow position: chr1:39639057-39638669 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 283
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 89, 122

Conread position: 245-690
Cow position: chr1:89915560-89915995 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 94

Conread position: 247-666
Cow position: chr1:60859920-60860350 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 98

Conread position: 250-670
Cow position: chr1:61554397-61553974 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 78

Conread position: 252-660
Cow position: chr1:13681315-13680892 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 289
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 56, 80

Conread position: 258-570
Cow position: chr1:94761642-94761343 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 219
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 48, 80

Conread position: 272-628
Cow position: chr1:99249495-99249849 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 254
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 36, 72

Conread position: 278-539
Cow position: chr1:100389096-100389348 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 182
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 31, 54

Conread position: 285-657
Cow position: chr1:13575210-13574853 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 256
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 23, 62

Conread position: 288-663
Cow position: chr1:24764117-24763762 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 254
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 18, 33

Conread position: 362-660
Cow position: chr1:90845602-90845315 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 364-681
Cow position: chr1:69702898-69703204 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 402-668
Cow position: chr1:4279783-4279524 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 82

Conread position: 402-668
Cow position: chr1:57893279-57893556 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 210
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 114, 80

Conread position: 403-672
Cow position: chr1:83321681-83321411 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 105

Conread position: 412-668
Cow position: chr1:13313924-13314171 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 195
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 140, 70

Conread position: 413-563
Cow position: chr1:41972987-41972841 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 10, 15

Conread position: 418-660
Cow position: chr1:28329841-28329607 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 185
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 79, 16

Conread position: 418-670
Cow position: chr1:57776395-57776647 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 194
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 75, 15

Conread position: 426-670
Cow position: chr1:64753277-64753519 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 432-672
Cow position: chr1:35393438-35393207 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 172
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 61, 75

Conread position: 440-670
Cow position: chr1:93244696-93244920 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 178
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 57, 74

Conread position: 454-659
Cow position: chr1:58303534-58303734 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 89, 28

Conread position: 460-681
Cow position: chr1:80275840-80275625 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 165
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 22, 0

Conread position: 468-666
Cow position: chr1:26511491-26511296 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 35, 45

Conread position: 490-649
Cow position: chr1:40878023-40877870 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 130
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 22, 0

Show alignments to all cow chromosomes.