Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 174-505 |
| Cow position: | chr10:19622056-19622381 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 193-515 |
| Cow position: | chr10:46080923-46080611 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 227 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 113, 9 |
| Conread position: | 195-566 |
| Cow position: | chr10:69202653-69202296 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 80, 23 |
| Conread position: | 196-694 |
| Cow position: | chr10:10756344-10755871 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 337 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 10, 66 |
| Conread position: | 197-657 |
| Cow position: | chr10:14959454-14959932 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 197-670 |
| Cow position: | chr10:38435129-38435570 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 73 |
| Conread position: | 197-672 |
| Cow position: | chr10:63030181-63029741 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 321 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 198-668 |
| Cow position: | chr10:58840340-58840805 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 85 |
| Conread position: | 200-663 |
| Cow position: | chr10:32980882-32981319 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 38 |
| Conread position: | 200-668 |
| Cow position: | chr10:12538021-12537550 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 140 |
| Conread position: | 204-331 |
| Cow position: | chr10:36790235-36790360 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 204-487 |
| Cow position: | chr10:20539428-20539704 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 14, 69 |
| Conread position: | 204-542 |
| Cow position: | chr10:52642588-52642909 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 102, 7 |
| Conread position: | 204-660 |
| Cow position: | chr10:62613652-62613216 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 117 |
| Conread position: | 204-660 |
| Cow position: | chr10:69685987-69685529 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 81 |
| Conread position: | 204-663 |
| Cow position: | chr10:52647251-52647690 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 74 |
| Conread position: | 204-663 |
| Cow position: | chr10:52665267-52665705 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 308 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 15, 70 |
| Conread position: | 205-668 |
| Cow position: | chr10:54966688-54967118 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 48 |
| Conread position: | 206-615 |
| Cow position: | chr10:40428330-40428723 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 116 |
| Conread position: | 206-662 |
| Cow position: | chr10:21373280-21372848 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 120 |
| Conread position: | 206-663 |
| Cow position: | chr10:23765297-23765736 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 134 |
| Conread position: | 206-663 |
| Cow position: | chr10:67566668-67567108 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 141 |
| Conread position: | 207-361 |
| Cow position: | chr10:16950717-16950870 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 11, 140 |
| Conread position: | 207-672 |
| Cow position: | chr10:19651778-19651337 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 92 |
| Conread position: | 207-676 |
| Cow position: | chr10:68370474-68370930 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 37 |
| Conread position: | 211-361 |
| Cow position: | chr10:23733672-23733819 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 95, 131 |
| Conread position: | 211-656 |
| Cow position: | chr10:17179513-17179053 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 95 |
| Conread position: | 211-659 |
| Cow position: | chr10:10223263-10223717 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 22 |
| Conread position: | 211-660 |
| Cow position: | chr10:4908845-4909301 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 135 |
| Conread position: | 211-660 |
| Cow position: | chr10:29495996-29495542 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 26 |
| Conread position: | 211-672 |
| Cow position: | chr10:8094875-8095323 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 70 |
| Conread position: | 212-361 |
| Cow position: | chr10:55931963-55932118 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 212-470 |
| Cow position: | chr10:41305652-41305399 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 94, 127 |
| Conread position: | 212-660 |
| Cow position: | chr10:3648900-3648471 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 212-681 |
| Cow position: | chr10:15381260-15381718 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 115 |
| Conread position: | 213-614 |
| Cow position: | chr10:50527900-50527513 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 93 |
| Conread position: | 213-669 |
| Cow position: | chr10:726314-726759 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 44 |
| Conread position: | 215-389 |
| Cow position: | chr10:4913173-4913349 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 216-688 |
| Cow position: | chr10:593018-592560 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 227-682 |
| Cow position: | chr10:26023319-26023780 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 12 |
| Conread position: | 229-615 |
| Cow position: | chr10:36474482-36474845 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 98 |
| Conread position: | 233-540 |
| Cow position: | chr10:65350086-65349793 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 74, 43 |
| Conread position: | 233-663 |
| Cow position: | chr10:46395988-46395578 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 88 |
| Conread position: | 235-663 |
| Cow position: | chr10:55305264-55305663 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 71, 40 |
| Conread position: | 239-656 |
| Cow position: | chr10:28854893-28854472 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 20, 175 |
| Conread position: | 241-662 |
| Cow position: | chr10:34806803-34806402 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 5, 18 |
| Conread position: | 245-587 |
| Cow position: | chr10:30939442-30939762 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 245-643 |
| Cow position: | chr10:33445058-33445432 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 77, 93 |
| Conread position: | 256-668 |
| Cow position: | chr10:63378711-63378314 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 74, 53 |
| Conread position: | 279-657 |
| Cow position: | chr10:7762265-7761903 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 249 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 154, 66 |
| Conread position: | 327-672 |
| Cow position: | chr10:16804441-16804108 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 14 |
| Conread position: | 374-667 |
| Cow position: | chr10:66427522-66427807 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 125, 24 |
| Conread position: | 402-676 |
| Cow position: | chr10:16951147-16951412 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 8, 81 |
| Conread position: | 402-682 |
| Cow position: | chr10:55932474-55932751 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 99 |
| Conread position: | 409-567 |
| Cow position: | chr10:42675500-42675345 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 409-659 |
| Cow position: | chr10:4601831-4601572 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 103, 15 |
| Conread position: | 409-661 |
| Cow position: | chr10:52666818-52666578 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 230, 71 |
| Conread position: | 410-663 |
| Cow position: | chr10:23734072-23734312 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 414-663 |
| Cow position: | chr10:63475460-63475227 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 36 |
| Conread position: | 418-681 |
| Cow position: | chr10:4664290-4664010 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 420-670 |
| Cow position: | chr10:42673567-42673320 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 14 |
| Conread position: | 424-671 |
| Cow position: | chr10:52420877-52421113 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 427-669 |
| Cow position: | chr10:64322634-64322878 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 64, 87 |
| Conread position: | 437-672 |
| Cow position: | chr10:5864028-5863795 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 464-682 |
| Cow position: | chr10:47743280-47743064 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 143, 40 |
| Conread position: | 480-668 |
| Cow position: | chr10:1862065-1861881 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 148, 26 |
| Conread position: | 493-681 |
| Cow position: | chr10:14423317-14423133 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 169, 18 |
Show alignments to all cow chromosomes.