Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 178-670 |
| Cow position: | chr11:76870389-76870832 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 342 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 131, 21 |
| Conread position: | 194-676 |
| Cow position: | chr11:80192308-80192771 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 148 |
| Conread position: | 196-670 |
| Cow position: | chr11:5441483-5440998 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 229 |
| Conread position: | 197-672 |
| Cow position: | chr11:26305602-26305138 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 150 |
| Conread position: | 199-619 |
| Cow position: | chr11:66033604-66034009 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 52 |
| Conread position: | 199-666 |
| Cow position: | chr11:70888525-70888069 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 127 |
| Conread position: | 201-474 |
| Cow position: | chr11:35576622-35576909 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 105, 17 |
| Conread position: | 201-668 |
| Cow position: | chr11:39277183-39276724 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 138 |
| Conread position: | 204-353 |
| Cow position: | chr11:14191201-14191354 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 127 |
| Conread position: | 204-370 |
| Cow position: | chr11:58537848-58537681 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 6, 136 |
| Conread position: | 204-444 |
| Cow position: | chr11:76871626-76871394 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 204-453 |
| Cow position: | chr11:8369185-8368934 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 11, 134 |
| Conread position: | 204-569 |
| Cow position: | chr11:26232884-26232508 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 270 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 14, 86 |
| Conread position: | 204-615 |
| Cow position: | chr11:3161212-3160800 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 95 |
| Conread position: | 204-661 |
| Cow position: | chr11:39997649-39997212 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 128 |
| Conread position: | 204-663 |
| Cow position: | chr11:14353636-14353201 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 7 |
| Conread position: | 204-672 |
| Cow position: | chr11:12167842-12167384 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 134 |
| Conread position: | 206-361 |
| Cow position: | chr11:2545694-2545844 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 206-460 |
| Cow position: | chr11:61833446-61833699 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 206-661 |
| Cow position: | chr11:896929-896492 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 5 |
| Conread position: | 206-661 |
| Cow position: | chr11:63671673-63671239 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 133 |
| Conread position: | 206-662 |
| Cow position: | chr11:49604293-49603858 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 309 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 207-466 |
| Cow position: | chr11:20992507-20992256 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 11, 71 |
| Conread position: | 207-653 |
| Cow position: | chr11:81347582-81348005 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 74 |
| Conread position: | 207-660 |
| Cow position: | chr11:14674172-14673741 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 139 |
| Conread position: | 207-663 |
| Cow position: | chr11:9754595-9755028 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 302 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 99, 132 |
| Conread position: | 207-663 |
| Cow position: | chr11:70058458-70058036 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 303 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 41, 26 |
| Conread position: | 207-668 |
| Cow position: | chr11:64813734-64814206 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 143 |
| Conread position: | 208-663 |
| Cow position: | chr11:7662113-7662583 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 89 |
| Conread position: | 209-669 |
| Cow position: | chr11:5292847-5292389 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 119 |
| Conread position: | 211-385 |
| Cow position: | chr11:80336053-80335880 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 95, 109 |
| Conread position: | 211-532 |
| Cow position: | chr11:63989104-63988797 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 126, 32 |
| Conread position: | 211-623 |
| Cow position: | chr11:11684669-11685060 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 24 |
| Conread position: | 211-649 |
| Cow position: | chr11:38679660-38680101 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 51 |
| Conread position: | 211-653 |
| Cow position: | chr11:30216553-30216133 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 120 |
| Conread position: | 211-657 |
| Cow position: | chr11:37319196-37319654 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 129 |
| Conread position: | 211-660 |
| Cow position: | chr11:14134657-14135114 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 105 |
| Conread position: | 211-663 |
| Cow position: | chr11:32206112-32205682 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 129 |
| Conread position: | 211-670 |
| Cow position: | chr11:76600138-76599672 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 50 |
| Conread position: | 211-672 |
| Cow position: | chr11:66166040-66166479 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 135 |
| Conread position: | 212-478 |
| Cow position: | chr11:66869969-66869710 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 127, 96 |
| Conread position: | 212-668 |
| Cow position: | chr11:30767099-30766667 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 92 |
| Conread position: | 212-672 |
| Cow position: | chr11:49490630-49491048 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 313 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 213-672 |
| Cow position: | chr11:42119696-42119258 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 126 |
| Conread position: | 213-675 |
| Cow position: | chr11:37334517-37334991 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 290 |
| Conread position: | 215-464 |
| Cow position: | chr11:7399884-7399642 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 54, 114 |
| Conread position: | 215-660 |
| Cow position: | chr11:30084601-30084160 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 23 |
| Conread position: | 234-675 |
| Cow position: | chr11:40366353-40366797 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 117 |
| Conread position: | 238-663 |
| Cow position: | chr11:72416436-72416843 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 288 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 8, 102 |
| Conread position: | 243-646 |
| Cow position: | chr11:32652845-32652463 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 60, 103 |
| Conread position: | 243-648 |
| Cow position: | chr11:72093209-72092827 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 245-660 |
| Cow position: | chr11:62409513-62409128 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 245-670 |
| Cow position: | chr11:50649483-50649048 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 32 |
| Conread position: | 246-662 |
| Cow position: | chr11:66889533-66889920 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 115, 59 |
| Conread position: | 262-657 |
| Cow position: | chr11:70142935-70142546 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 60 |
| Conread position: | 263-660 |
| Cow position: | chr11:77160969-77161371 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 83 |
| Conread position: | 337-660 |
| Cow position: | chr11:79726555-79726872 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 338-615 |
| Cow position: | chr11:63275935-63275664 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 366-670 |
| Cow position: | chr11:6575249-6575549 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 380-542 |
| Cow position: | chr11:58537631-58537475 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 397-670 |
| Cow position: | chr11:7044617-7044882 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 402-668 |
| Cow position: | chr11:4678025-4678284 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 141, 80 |
| Conread position: | 402-681 |
| Cow position: | chr11:77178313-77178588 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 110 |
| Conread position: | 409-570 |
| Cow position: | chr11:26280385-26280227 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 409-670 |
| Cow position: | chr11:106218-106476 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 21 |
| Conread position: | 415-570 |
| Cow position: | chr11:61834024-61834175 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 424-670 |
| Cow position: | chr11:7050927-7051164 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 454-658 |
| Cow position: | chr11:79807685-79807888 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 458-663 |
| Cow position: | chr11:35577101-35577312 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 88, 24 |
| Conread position: | 459-615 |
| Cow position: | chr11:35453469-35453623 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 460-670 |
| Cow position: | chr11:2546067-2546275 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 462-666 |
| Cow position: | chr11:20991103-20990903 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 20 |
| Conread position: | 466-670 |
| Cow position: | chr11:76871393-76871191 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 106, 16 |
| Conread position: | 467-671 |
| Cow position: | chr11:66869352-66869149 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 89, 45 |
| Conread position: | 547-670 |
| Cow position: | chr11:7399395-7399273 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
Show alignments to all cow chromosomes.