Cow genome map

Conread name: Ss1.1-Thy1-THY010030C01.5

Conread position: 193-468
Cow position: chr12:10853298-10853564 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 190
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 113, 14

Conread position: 194-670
Cow position: chr12:39115430-39114961 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 152

Conread position: 199-669
Cow position: chr12:5982631-5982140 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 216

Conread position: 200-518
Cow position: chr12:23225857-23226162 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 230
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 19, 78

Conread position: 201-656
Cow position: chr12:15131485-15131955 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 17

Conread position: 201-663
Cow position: chr12:9014328-9013899 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 102

Conread position: 201-666
Cow position: chr12:34598146-34597700 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 10

Conread position: 201-671
Cow position: chr12:35638504-35638954 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 9

Conread position: 202-663
Cow position: chr12:39177907-39177476 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 43

Conread position: 204-663
Cow position: chr12:36251264-36251701 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 36

Conread position: 204-672
Cow position: chr12:20225308-20225748 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 77

Conread position: 205-534
Cow position: chr12:32339036-32339367 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 229
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 10, 127

Conread position: 205-670
Cow position: chr12:26292932-26292475 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 13

Conread position: 207-570
Cow position: chr12:27133195-27133558 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 114

Conread position: 207-613
Cow position: chr12:5250900-5251286 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 287
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 99, 139

Conread position: 207-628
Cow position: chr12:21677040-21676644 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 294
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 78

Conread position: 207-666
Cow position: chr12:21268238-21268690 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 138

Conread position: 209-667
Cow position: chr12:45704215-45703753 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 26

Conread position: 211-355
Cow position: chr12:16352861-16352718 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 35, 25

Conread position: 211-497
Cow position: chr12:32865515-32865811 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 213
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 95, 48

Conread position: 211-524
Cow position: chr12:17690930-17691237 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 127

Conread position: 211-656
Cow position: chr12:30531523-30531958 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 27

Conread position: 211-660
Cow position: chr12:36069538-36069079 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 117

Conread position: 211-670
Cow position: chr12:42786471-42786027 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 128

Conread position: 211-672
Cow position: chr12:2004890-2005349 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 115

Conread position: 211-672
Cow position: chr12:30232106-30231668 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 61

Conread position: 211-672
Cow position: chr12:42941283-42940838 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 22

Conread position: 211-683
Cow position: chr12:15073142-15072678 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 9

Conread position: 212-670
Cow position: chr12:8493795-8494246 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 24

Conread position: 212-687
Cow position: chr12:13634455-13634931 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 295

Conread position: 213-674
Cow position: chr12:8963379-8963812 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 306
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 35, 23

Conread position: 221-672
Cow position: chr12:16082078-16081618 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 18

Conread position: 228-570
Cow position: chr12:30446689-30446356 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 107

Conread position: 234-681
Cow position: chr12:6932014-6931558 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 93

Conread position: 243-648
Cow position: chr12:39937155-39937540 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 274
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 100, 39

Conread position: 244-672
Cow position: chr12:34465432-34465015 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 280
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 84, 108

Conread position: 245-567
Cow position: chr12:9276740-9277048 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 232
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 63, 83

Conread position: 245-660
Cow position: chr12:16908999-16908580 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 298
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 115, 61

Conread position: 246-683
Cow position: chr12:4146470-4146049 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 80

Conread position: 272-668
Cow position: chr12:31871253-31870859 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 55

Conread position: 292-669
Cow position: chr12:11212987-11213351 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 17

Conread position: 362-615
Cow position: chr12:6689665-6689419 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 184
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 75, 19

Conread position: 402-615
Cow position: chr12:14958194-14958406 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 69, 75

Conread position: 402-625
Cow position: chr12:21667603-21667385 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 59, 67

Conread position: 402-670
Cow position: chr12:15365750-15365478 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 211
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 139, 78

Conread position: 402-670
Cow position: chr12:31608857-31608596 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 407-690
Cow position: chr12:34395459-34395737 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 204
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 79, 135

Conread position: 418-670
Cow position: chr12:40548957-40549208 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 15

Conread position: 424-671
Cow position: chr12:39551765-39552009 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 431-681
Cow position: chr12:41777827-41778069 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 182
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 51, 0

Conread position: 443-680
Cow position: chr12:16352493-16352254 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 182
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 54, 37

Conread position: 459-670
Cow position: chr12:26174407-26174609 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 92, 25

Show alignments to all cow chromosomes.