Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 165-566 |
| Cow position: | chr13:27885492-27885099 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 274 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 141, 29 |
| Conread position: | 184-648 |
| Cow position: | chr13:19327700-19328151 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 51 |
| Conread position: | 192-672 |
| Cow position: | chr13:31437728-31437264 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 157 |
| Conread position: | 194-660 |
| Cow position: | chr13:44433524-44434001 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 223 |
| Conread position: | 199-330 |
| Cow position: | chr13:59434717-59434584 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 199-567 |
| Cow position: | chr13:50205474-50205831 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 107, 84 |
| Conread position: | 199-660 |
| Cow position: | chr13:56232166-56231696 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 217 |
| Conread position: | 199-683 |
| Cow position: | chr13:14610520-14610985 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 122 |
| Conread position: | 204-672 |
| Cow position: | chr13:55952536-55952997 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 14 |
| Conread position: | 205-615 |
| Cow position: | chr13:25347680-25347292 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 85, 15 |
| Conread position: | 205-660 |
| Cow position: | chr13:53827058-53826627 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 13 |
| Conread position: | 205-660 |
| Cow position: | chr13:55382841-55383311 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 81 |
| Conread position: | 206-505 |
| Cow position: | chr13:48946280-48945999 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 116 |
| Conread position: | 206-532 |
| Cow position: | chr13:22944398-22944716 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 87, 13 |
| Conread position: | 206-534 |
| Cow position: | chr13:26307584-26307899 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 100, 5 |
| Conread position: | 206-672 |
| Cow position: | chr13:6334080-6333631 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 134 |
| Conread position: | 206-682 |
| Cow position: | chr13:20268356-20267884 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 13 |
| Conread position: | 207-602 |
| Cow position: | chr13:38108481-38108844 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 207-661 |
| Cow position: | chr13:15853251-15853688 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 131 |
| Conread position: | 208-660 |
| Cow position: | chr13:17935902-17935457 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 131 |
| Conread position: | 211-361 |
| Cow position: | chr13:43639935-43639785 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 95, 124 |
| Conread position: | 211-549 |
| Cow position: | chr13:20460461-20460808 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 116 |
| Conread position: | 211-594 |
| Cow position: | chr13:17130021-17129623 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 32 |
| Conread position: | 211-611 |
| Cow position: | chr13:34720499-34720128 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 118, 94 |
| Conread position: | 211-656 |
| Cow position: | chr13:16810380-16809931 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 137 |
| Conread position: | 211-663 |
| Cow position: | chr13:20630903-20630465 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 135 |
| Conread position: | 211-668 |
| Cow position: | chr13:26366816-26367285 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 128 |
| Conread position: | 211-668 |
| Cow position: | chr13:41201262-41201726 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 116 |
| Conread position: | 211-679 |
| Cow position: | chr13:8643599-8644082 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 119 |
| Conread position: | 212-567 |
| Cow position: | chr13:50188009-50188343 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 94, 66 |
| Conread position: | 212-650 |
| Cow position: | chr13:13498694-13498271 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 134 |
| Conread position: | 212-669 |
| Cow position: | chr13:25785707-25786153 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 127 |
| Conread position: | 213-663 |
| Cow position: | chr13:25343395-25342947 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 159 |
| Conread position: | 214-501 |
| Cow position: | chr13:20822020-20821737 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 216-668 |
| Cow position: | chr13:51135942-51135472 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 332 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 114, 64 |
| Conread position: | 233-663 |
| Cow position: | chr13:48204191-48203765 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 75, 40 |
| Conread position: | 235-591 |
| Cow position: | chr13:51091468-51091094 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 266 |
| Conread position: | 256-638 |
| Cow position: | chr13:56227766-56227370 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 162 |
| Conread position: | 277-516 |
| Cow position: | chr13:34470453-34470682 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 362-653 |
| Cow position: | chr13:25792353-25792063 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 97, 48 |
| Conread position: | 367-668 |
| Cow position: | chr13:6350094-6349800 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 16 |
| Conread position: | 402-553 |
| Cow position: | chr13:56863683-56863539 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 402-593 |
| Cow position: | chr13:27228218-27228032 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 145, 11 |
| Conread position: | 402-672 |
| Cow position: | chr13:42649709-42649453 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 431-647 |
| Cow position: | chr13:36322850-36323063 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 7, 76 |
| Conread position: | 437-660 |
| Cow position: | chr13:2772526-2772303 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 74 |
| Conread position: | 438-614 |
| Cow position: | chr13:43712490-43712313 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 146 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 78 |
| Conread position: | 515-685 |
| Cow position: | chr13:42031884-42031721 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 86 |
| Conread position: | 520-663 |
| Cow position: | chr13:22944931-22945080 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
Show alignments to all cow chromosomes.