Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 151-667 |
| Cow position: | |
| Alignm length: | 537 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 199 |
| Conread position: | 189-672 |
| Cow position: | |
| Alignm length: | 507 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 29 |
| Conread position: | 198-672 |
| Cow position: | |
| Alignm length: | 495 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 40 |
| Conread position: | 204-361 |
| Cow position: | |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 137 |
| Conread position: | 204-372 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 107, 16 |
| Conread position: | 204-478 |
| Cow position: | |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 7, 102 |
| Conread position: | 204-491 |
| Cow position: | |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 103 |
| Conread position: | 204-590 |
| Cow position: | |
| Alignm length: | 390 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 103 |
| Conread position: | 204-614 |
| Cow position: | |
| Alignm length: | 413 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 7 |
| Conread position: | 204-660 |
| Cow position: | |
| Alignm length: | 472 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 293 |
| Conread position: | 204-668 |
| Cow position: | |
| Alignm length: | 478 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 126 |
| Conread position: | 205-322 |
| Cow position: | |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 101, 6 |
| Conread position: | 206-523 |
| Cow position: | |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 47 |
| Conread position: | 206-544 |
| Cow position: | |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 12, 76 |
| Conread position: | 207-660 |
| Cow position: | |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 101, 68 |
| Conread position: | 207-663 |
| Cow position: | |
| Alignm length: | 476 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 70 |
| Conread position: | 207-668 |
| Cow position: | |
| Alignm length: | 465 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 91 |
| Conread position: | 207-672 |
| Cow position: | |
| Alignm length: | 470 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 75 |
| Conread position: | 210-548 |
| Cow position: | |
| Alignm length: | 349 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 127 |
| Conread position: | 211-509 |
| Cow position: | |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 95, 115 |
| Conread position: | 211-548 |
| Cow position: | |
| Alignm length: | 347 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 54, 88 |
| Conread position: | 211-549 |
| Cow position: | |
| Alignm length: | 347 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 95, 195 |
| Conread position: | 211-570 |
| Cow position: | |
| Alignm length: | 364 |
| Alignm identity: | 252 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 95, 128 |
| Conread position: | 211-570 |
| Cow position: | |
| Alignm length: | 363 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 95, 109 |
| Conread position: | 211-660 |
| Cow position: | |
| Alignm length: | 454 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 211-663 |
| Cow position: | |
| Alignm length: | 455 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 128 |
| Conread position: | 211-669 |
| Cow position: | |
| Alignm length: | 475 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 117 |
| Conread position: | 211-670 |
| Cow position: | |
| Alignm length: | 469 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 120 |
| Conread position: | 211-670 |
| Cow position: | |
| Alignm length: | 462 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 33 |
| Conread position: | 211-670 |
| Cow position: | |
| Alignm length: | 465 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 135 |
| Conread position: | 211-670 |
| Cow position: | |
| Alignm length: | 478 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 135 |
| Conread position: | 211-715 |
| Cow position: | |
| Alignm length: | 524 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 79 |
| Conread position: | 212-540 |
| Cow position: | |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 118 |
| Conread position: | 212-660 |
| Cow position: | |
| Alignm length: | 466 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 75 |
| Conread position: | 212-663 |
| Cow position: | |
| Alignm length: | 467 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 116 |
| Conread position: | 213-660 |
| Cow position: | |
| Alignm length: | 463 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 200 |
| Conread position: | 215-668 |
| Cow position: | |
| Alignm length: | 460 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 51 |
| Conread position: | 231-660 |
| Cow position: | |
| Alignm length: | 437 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 100 |
| Conread position: | 259-546 |
| Cow position: | |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 259-615 |
| Cow position: | |
| Alignm length: | 360 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 21, 76 |
| Conread position: | 260-468 |
| Cow position: | |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 86 |
| Conread position: | 297-658 |
| Cow position: | |
| Alignm length: | 364 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 362-660 |
| Cow position: | |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 374-556 |
| Cow position: | |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 399-537 |
| Cow position: | |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 402-649 |
| Cow position: | |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 405-653 |
| Cow position: | |
| Alignm length: | 252 |
| Alignm identity: | 190 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 187, 93 |
| Conread position: | 412-648 |
| Cow position: | |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 412-660 |
| Cow position: | |
| Alignm length: | 249 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 424-671 |
| Cow position: | |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 67, 84 |
| Conread position: | 426-670 |
| Cow position: | |
| Alignm length: | 249 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 53 |
| Conread position: | 437-670 |
| Cow position: | |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 447-670 |
| Cow position: | |
| Alignm length: | 225 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 35 |
| Conread position: | 473-672 |
| Cow position: | |
| Alignm length: | 200 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 28, 0 |
Show alignments to all cow chromosomes.