Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 196-660 |
| Cow position: | chr15:53189185-53189624 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 111 |
| Conread position: | 199-361 |
| Cow position: | chr15:42404150-42403986 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 77, 126 |
| Conread position: | 199-523 |
| Cow position: | chr15:45000054-44999740 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 144, 21 |
| Conread position: | 199-615 |
| Cow position: | chr15:8438805-8439200 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 290 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 122, 12 |
| Conread position: | 199-663 |
| Cow position: | chr15:8439276-8439753 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 150 |
| Conread position: | 199-663 |
| Cow position: | chr15:22579623-22579180 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 107, 29 |
| Conread position: | 199-687 |
| Cow position: | chr15:6446989-6447493 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 148 |
| Conread position: | 201-353 |
| Cow position: | chr15:36381988-36382145 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 201-497 |
| Cow position: | chr15:37975216-37975502 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 194, 10 |
| Conread position: | 201-663 |
| Cow position: | chr15:45003066-45002634 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 201-668 |
| Cow position: | chr15:45509373-45509837 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 134 |
| Conread position: | 204-657 |
| Cow position: | chr15:34170795-34170354 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 135 |
| Conread position: | 204-670 |
| Cow position: | chr15:15632420-15632888 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 124 |
| Conread position: | 205-615 |
| Cow position: | chr15:47622951-47623341 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 206-627 |
| Cow position: | chr15:48107256-48107663 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 134 |
| Conread position: | 206-663 |
| Cow position: | chr15:37110072-37110509 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 109 |
| Conread position: | 206-674 |
| Cow position: | chr15:19935035-19934595 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 438, 99 |
| Conread position: | 207-356 |
| Cow position: | chr15:14418544-14418394 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 207-613 |
| Cow position: | chr15:14470574-14470977 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 137 |
| Conread position: | 207-672 |
| Cow position: | chr15:8948792-8949236 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 328 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 8, 83 |
| Conread position: | 207-672 |
| Cow position: | chr15:18212634-18213087 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 12 |
| Conread position: | 207-691 |
| Cow position: | chr15:22548499-22548039 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 90 |
| Conread position: | 208-661 |
| Cow position: | chr15:13994939-13994501 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 210-672 |
| Cow position: | chr15:45696145-45696610 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 302 |
| Conread position: | 211-415 |
| Cow position: | chr15:51240930-51241131 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 95, 118 |
| Conread position: | 211-468 |
| Cow position: | chr15:45223573-45223818 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 211-557 |
| Cow position: | chr15:29882995-29882662 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 95, 124 |
| Conread position: | 211-660 |
| Cow position: | chr15:44997616-44998077 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 101 |
| Conread position: | 211-661 |
| Cow position: | chr15:10609872-10610349 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 108, 94 |
| Conread position: | 211-663 |
| Cow position: | chr15:12799148-12799580 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 135 |
| Conread position: | 211-667 |
| Cow position: | chr15:42660184-42659744 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 130 |
| Conread position: | 211-669 |
| Cow position: | chr15:22516837-22516402 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 118 |
| Conread position: | 211-672 |
| Cow position: | chr15:49129968-49130419 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 117 |
| Conread position: | 212-668 |
| Cow position: | chr15:16432172-16431730 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 116 |
| Conread position: | 213-663 |
| Cow position: | chr15:675249-674810 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 93, 125 |
| Conread position: | 214-660 |
| Cow position: | chr15:25466543-25466092 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 132 |
| Conread position: | 214-668 |
| Cow position: | chr15:19728564-19729018 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 24 |
| Conread position: | 214-670 |
| Cow position: | chr15:50442407-50441940 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 132 |
| Conread position: | 215-658 |
| Cow position: | chr15:50336561-50336133 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 309 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 5, 15 |
| Conread position: | 221-672 |
| Cow position: | chr15:26171305-26170856 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 142 |
| Conread position: | 227-682 |
| Cow position: | chr15:42833450-42833877 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 59 |
| Conread position: | 228-542 |
| Cow position: | chr15:11759595-11759915 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 80, 100 |
| Conread position: | 229-623 |
| Cow position: | chr15:35449296-35449692 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 117 |
| Conread position: | 233-478 |
| Cow position: | chr15:22893099-22892860 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 106 |
| Conread position: | 234-660 |
| Cow position: | chr15:1304734-1304295 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 264 |
| Conread position: | 238-674 |
| Cow position: | chr15:5844664-5845079 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 12, 102 |
| Conread position: | 238-691 |
| Cow position: | chr15:40218032-40217586 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 61 |
| Conread position: | 246-663 |
| Cow position: | chr15:22739872-22739489 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 60, 93 |
| Conread position: | 250-672 |
| Cow position: | chr15:33611495-33611934 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 90 |
| Conread position: | 293-663 |
| Cow position: | chr15:24399902-24399547 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 13, 53 |
| Conread position: | 340-613 |
| Cow position: | chr15:29656716-29656455 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 205, 52 |
| Conread position: | 362-670 |
| Cow position: | chr15:18675562-18675863 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 366-634 |
| Cow position: | chr15:14418363-14418105 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 374-660 |
| Cow position: | chr15:32659925-32660198 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 266, 23 |
| Conread position: | 378-669 |
| Cow position: | chr15:51241115-51241399 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 20 |
| Conread position: | 392-670 |
| Cow position: | chr15:17189723-17189996 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 198, 78 |
| Conread position: | 403-668 |
| Cow position: | chr15:3054460-3054219 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 405-660 |
| Cow position: | chr15:17005473-17005225 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 409-663 |
| Cow position: | chr15:18280250-18280011 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 409-668 |
| Cow position: | chr15:42551662-42551409 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 418-681 |
| Cow position: | chr15:32432364-32432621 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 16 |
| Conread position: | 424-671 |
| Cow position: | chr15:20128654-20128898 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 426-656 |
| Cow position: | chr15:50547827-50547597 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 87 |
| Conread position: | 447-667 |
| Cow position: | chr15:6309488-6309268 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 460-663 |
| Cow position: | chr15:33464634-33464836 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 138, 22 |
| Conread position: | 460-666 |
| Cow position: | chr15:37755766-37755554 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 88, 51 |
Show alignments to all cow chromosomes.