Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 183-681 |
| Cow position: | chr16:13513088-13513600 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 117 |
| Conread position: | 195-683 |
| Cow position: | chr16:40502027-40501549 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 98 |
| Conread position: | 196-554 |
| Cow position: | chr16:23923936-23923590 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 22, 110 |
| Conread position: | 196-661 |
| Cow position: | chr16:33710422-33710861 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 119 |
| Conread position: | 200-597 |
| Cow position: | chr16:33872296-33871911 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 15, 125 |
| Conread position: | 202-548 |
| Cow position: | chr16:29626016-29626349 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 95, 132 |
| Conread position: | 204-317 |
| Cow position: | chr16:17734648-17734535 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 102 |
| Conread position: | 204-486 |
| Cow position: | chr16:19941965-19942235 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 102, 7 |
| Conread position: | 204-558 |
| Cow position: | chr16:23385509-23385853 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 204-663 |
| Cow position: | chr16:6724946-6725384 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 135 |
| Conread position: | 204-668 |
| Cow position: | chr16:11484411-11484862 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 142 |
| Conread position: | 204-668 |
| Cow position: | chr16:33435407-33435872 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 135 |
| Conread position: | 204-670 |
| Cow position: | chr16:35447061-35447503 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 7 |
| Conread position: | 204-681 |
| Cow position: | chr16:411952-412428 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 208 |
| Conread position: | 204-681 |
| Cow position: | chr16:10933623-10933177 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 24 |
| Conread position: | 205-668 |
| Cow position: | chr16:33439174-33439637 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 57 |
| Conread position: | 206-359 |
| Cow position: | chr16:49910438-49910594 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 10, 141 |
| Conread position: | 206-466 |
| Cow position: | chr16:31128611-31128864 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 115 |
| Conread position: | 206-468 |
| Cow position: | chr16:11764116-11764367 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 175, 91 |
| Conread position: | 206-611 |
| Cow position: | chr16:33903387-33902979 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 101, 116 |
| Conread position: | 206-663 |
| Cow position: | chr16:55127353-55126918 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 5 |
| Conread position: | 207-457 |
| Cow position: | chr16:56210383-56210138 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 8, 137 |
| Conread position: | 207-668 |
| Cow position: | chr16:37100503-37100965 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 205 |
| Conread position: | 207-670 |
| Cow position: | chr16:15257922-15258397 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 141 |
| Conread position: | 210-468 |
| Cow position: | chr16:35445632-35445889 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 96, 132 |
| Conread position: | 211-386 |
| Cow position: | chr16:10179246-10179061 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 95, 48 |
| Conread position: | 211-404 |
| Cow position: | chr16:51083695-51083890 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 211-469 |
| Cow position: | chr16:14180543-14180303 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 211-491 |
| Cow position: | chr16:16724497-16724780 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 13 |
| Conread position: | 211-535 |
| Cow position: | chr16:50231326-50231014 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 127 |
| Conread position: | 211-591 |
| Cow position: | chr16:4141689-4141309 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 65 |
| Conread position: | 211-648 |
| Cow position: | chr16:45161126-45161541 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 298 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 12, 27 |
| Conread position: | 211-649 |
| Cow position: | chr16:40415924-40415505 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 51 |
| Conread position: | 211-660 |
| Cow position: | chr16:40521764-40522222 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 202 |
| Conread position: | 211-668 |
| Cow position: | chr16:571668-571210 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 202 |
| Conread position: | 211-670 |
| Cow position: | chr16:12093239-12092784 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 135 |
| Conread position: | 211-671 |
| Cow position: | chr16:3159839-3160264 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 14 |
| Conread position: | 211-672 |
| Cow position: | chr16:3139601-3140028 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 29 |
| Conread position: | 211-675 |
| Cow position: | chr16:40511658-40511213 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 108 |
| Conread position: | 211-681 |
| Cow position: | chr16:14182956-14182506 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 116 |
| Conread position: | 211-683 |
| Cow position: | chr16:17163092-17162611 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 14 |
| Conread position: | 212-660 |
| Cow position: | chr16:33377699-33377254 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 212-663 |
| Cow position: | chr16:48895553-48896006 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 50 |
| Conread position: | 212-668 |
| Cow position: | chr16:43860863-43861310 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 115 |
| Conread position: | 213-398 |
| Cow position: | chr16:10763958-10764141 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 93, 129 |
| Conread position: | 213-671 |
| Cow position: | chr16:21725610-21726042 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 213-672 |
| Cow position: | chr16:24586566-24587017 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 131 |
| Conread position: | 215-672 |
| Cow position: | chr16:44460203-44460669 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 12 |
| Conread position: | 219-617 |
| Cow position: | chr16:53495224-53495608 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 39, 141 |
| Conread position: | 220-670 |
| Cow position: | chr16:50507818-50508257 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 246-663 |
| Cow position: | chr16:48799735-48800126 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 52, 26 |
| Conread position: | 247-658 |
| Cow position: | chr16:10669681-10669261 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 164 |
| Conread position: | 362-648 |
| Cow position: | chr16:203423-203144 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 40 |
| Conread position: | 393-672 |
| Cow position: | chr16:49910804-49911079 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 65 |
| Conread position: | 400-660 |
| Cow position: | chr16:32454209-32453953 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 402-660 |
| Cow position: | chr16:16076285-16076529 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 402-670 |
| Cow position: | chr16:10179029-10178766 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 402-672 |
| Cow position: | chr16:16087921-16088177 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 403-660 |
| Cow position: | chr16:33531455-33531210 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 80 |
| Conread position: | 413-613 |
| Cow position: | chr16:17734460-17734273 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 420-670 |
| Cow position: | chr16:52619296-52619543 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 14 |
| Conread position: | 424-574 |
| Cow position: | chr16:19262960-19263105 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 424-670 |
| Cow position: | chr16:1631921-1631686 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 424-671 |
| Cow position: | chr16:22243822-22243577 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 8 |
| Conread position: | 424-671 |
| Cow position: | chr16:35415419-35415663 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 426-663 |
| Cow position: | chr16:7433532-7433756 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 432-672 |
| Cow position: | chr16:12004675-12004441 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 437-649 |
| Cow position: | chr16:33874760-33874970 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 438-635 |
| Cow position: | chr16:28068178-28068359 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 440-672 |
| Cow position: | chr16:56209796-56209566 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 43 |
| Conread position: | 442-674 |
| Cow position: | chr16:13877791-13878024 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 55, 26 |
| Conread position: | 443-660 |
| Cow position: | chr16:47366380-47366584 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 446-663 |
| Cow position: | chr16:5784427-5784220 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 453-670 |
| Cow position: | chr16:35291230-35291440 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 171 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 507-681 |
| Cow position: | chr16:35445902-35446076 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 519-672 |
| Cow position: | chr16:16724778-16724931 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 133 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.