Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 181-661 |
| Cow position: | chr17:1903244-1903693 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 331 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 99 |
| Conread position: | 193-562 |
| Cow position: | chr17:23467953-23468333 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 198-357 |
| Cow position: | chr17:36036217-36036375 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 199-663 |
| Cow position: | chr17:34040636-34041099 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 19 |
| Conread position: | 205-533 |
| Cow position: | chr17:4187439-4187117 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 48, 15 |
| Conread position: | 205-636 |
| Cow position: | chr17:34377916-34377495 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 122 |
| Conread position: | 206-613 |
| Cow position: | chr17:21920614-21921008 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 137 |
| Conread position: | 206-650 |
| Cow position: | chr17:36204727-36205160 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 109 |
| Conread position: | 206-664 |
| Cow position: | chr17:30681044-30681468 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 320 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 100, 43 |
| Conread position: | 207-670 |
| Cow position: | chr17:22460914-22460440 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 137 |
| Conread position: | 207-672 |
| Cow position: | chr17:10851773-10851329 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 81 |
| Conread position: | 208-663 |
| Cow position: | chr17:10548876-10549321 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 120 |
| Conread position: | 210-570 |
| Cow position: | chr17:24993884-24993547 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 96, 127 |
| Conread position: | 211-497 |
| Cow position: | chr17:41410378-41410088 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 97, 27 |
| Conread position: | 211-608 |
| Cow position: | chr17:25650439-25650835 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 160 |
| Conread position: | 211-628 |
| Cow position: | chr17:5718947-5719343 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 211-670 |
| Cow position: | chr17:21343049-21342582 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 282 |
| Conread position: | 211-672 |
| Cow position: | chr17:42793665-42794135 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 288 |
| Conread position: | 212-524 |
| Cow position: | chr17:11292814-11293118 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 94, 127 |
| Conread position: | 212-650 |
| Cow position: | chr17:11076174-11075744 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 41 |
| Conread position: | 212-670 |
| Cow position: | chr17:24566636-24566195 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 98 |
| Conread position: | 213-653 |
| Cow position: | chr17:35129541-35129968 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 215-369 |
| Cow position: | chr17:18597441-18597286 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 220-648 |
| Cow position: | chr17:17939056-17938649 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 109 |
| Conread position: | 225-674 |
| Cow position: | chr17:23906901-23907335 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 82 |
| Conread position: | 243-648 |
| Cow position: | chr17:4735841-4736229 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 104 |
| Conread position: | 243-663 |
| Cow position: | chr17:5820873-5821308 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 85 |
| Conread position: | 248-648 |
| Cow position: | chr17:17073652-17073274 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 20, 9 |
| Conread position: | 260-648 |
| Cow position: | chr17:35448893-35449252 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 262-672 |
| Cow position: | chr17:32148153-32147768 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 287-680 |
| Cow position: | chr17:16354987-16354618 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 327-670 |
| Cow position: | chr17:6002933-6003270 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 362-668 |
| Cow position: | chr17:23463561-23463869 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 36 |
| Conread position: | 397-648 |
| Cow position: | chr17:37707797-37707548 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 5 |
| Conread position: | 402-619 |
| Cow position: | chr17:38043658-38043877 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 105 |
| Conread position: | 402-660 |
| Cow position: | chr17:44230932-44230679 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 186, 46 |
| Conread position: | 408-706 |
| Cow position: | chr17:25103755-25103462 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 105 |
| Conread position: | 412-653 |
| Cow position: | chr17:18597003-18597237 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 226, 31 |
| Conread position: | 412-660 |
| Cow position: | chr17:45798716-45798483 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 237, 68 |
| Conread position: | 424-670 |
| Cow position: | chr17:15919554-15919318 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 432-670 |
| Cow position: | chr17:24862467-24862230 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 432-688 |
| Cow position: | chr17:24860673-24860427 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 81 |
| Conread position: | 433-648 |
| Cow position: | chr17:27918867-27919072 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 439-648 |
| Cow position: | chr17:27799254-27799457 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 442-642 |
| Cow position: | chr17:5528231-5528422 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 475-672 |
| Cow position: | chr17:41336854-41337039 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 480-670 |
| Cow position: | chr17:6992786-6992978 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 170, 32 |
| Conread position: | 538-672 |
| Cow position: | chr17:36038210-36038344 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.