Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 150-642 |
| Cow position: | chr18:25701035-25700555 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 196-660 |
| Cow position: | chr18:24635779-24636237 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 22 |
| Conread position: | 201-659 |
| Cow position: | chr18:3689679-3689239 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 145 |
| Conread position: | 201-663 |
| Cow position: | chr18:25694498-25694944 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 313 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 102, 113 |
| Conread position: | 204-570 |
| Cow position: | chr18:40702122-40701764 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 100, 7 |
| Conread position: | 204-663 |
| Cow position: | chr18:37078944-37078504 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 311 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 102, 24 |
| Conread position: | 205-668 |
| Cow position: | chr18:12779363-12778904 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 33 |
| Conread position: | 206-663 |
| Cow position: | chr18:9257660-9257221 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 100 |
| Conread position: | 206-670 |
| Cow position: | chr18:29884591-29885048 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 200 |
| Conread position: | 207-457 |
| Cow position: | chr18:32199086-32199339 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 133 |
| Conread position: | 207-653 |
| Cow position: | chr18:24799301-24798846 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 111 |
| Conread position: | 207-663 |
| Cow position: | chr18:15807205-15807642 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 208-681 |
| Cow position: | chr18:52440006-52440453 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 97 |
| Conread position: | 210-670 |
| Cow position: | chr18:4699152-4699629 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 139 |
| Conread position: | 211-492 |
| Cow position: | chr18:44136916-44137203 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 211-653 |
| Cow position: | chr18:51804273-51803826 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 208 |
| Conread position: | 211-662 |
| Cow position: | chr18:54128571-54128139 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 104 |
| Conread position: | 211-663 |
| Cow position: | chr18:49386110-49386542 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 109 |
| Conread position: | 211-668 |
| Cow position: | chr18:30228325-30228769 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 137 |
| Conread position: | 211-688 |
| Cow position: | chr18:46883056-46883545 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 27 |
| Conread position: | 212-468 |
| Cow position: | chr18:43794662-43794419 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 212-470 |
| Cow position: | chr18:49879531-49879782 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 96, 123 |
| Conread position: | 212-672 |
| Cow position: | chr18:35087328-35086879 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 115 |
| Conread position: | 213-546 |
| Cow position: | chr18:25670583-25670236 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 133 |
| Conread position: | 213-653 |
| Cow position: | chr18:51780183-51779740 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 133 |
| Conread position: | 214-615 |
| Cow position: | chr18:46864746-46865165 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 212 |
| Conread position: | 214-672 |
| Cow position: | chr18:25694502-25694053 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 140 |
| Conread position: | 215-615 |
| Cow position: | chr18:9018011-9017621 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 62 |
| Conread position: | 233-663 |
| Cow position: | chr18:8284161-8283755 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 106 |
| Conread position: | 245-613 |
| Cow position: | chr18:15946241-15946589 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 246-516 |
| Cow position: | chr18:8254698-8254959 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 94 |
| Conread position: | 261-663 |
| Cow position: | chr18:47293730-47294114 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 278 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 45, 61 |
| Conread position: | 268-658 |
| Cow position: | chr18:13788525-13788143 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 113 |
| Conread position: | 287-658 |
| Cow position: | chr18:54063792-54063436 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 39 |
| Conread position: | 356-668 |
| Cow position: | chr18:11268717-11268407 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 362-611 |
| Cow position: | chr18:20945514-20945260 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 102, 44 |
| Conread position: | 395-570 |
| Cow position: | chr18:54933115-54932949 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 100, 116 |
| Conread position: | 402-571 |
| Cow position: | chr18:51409922-51410091 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 97, 107 |
| Conread position: | 407-659 |
| Cow position: | chr18:16054716-16054460 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 133, 17 |
| Conread position: | 418-671 |
| Cow position: | chr18:8211086-8211339 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 79, 20 |
| Conread position: | 423-674 |
| Cow position: | chr18:52467753-52467507 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 440-644 |
| Cow position: | chr18:48310379-48310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 179, 42 |
| Conread position: | 440-672 |
| Cow position: | chr18:14645209-14644987 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 443-683 |
| Cow position: | chr18:4176884-4177120 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 110, 41 |
| Conread position: | 451-662 |
| Cow position: | chr18:32199356-32199561 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 199, 31 |
| Conread position: | 467-663 |
| Cow position: | chr18:44137678-44137872 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 117, 45 |
| Conread position: | 473-627 |
| Cow position: | chr18:43794209-43794064 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 515-672 |
| Cow position: | chr18:40352492-40352342 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.