Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 150-642 |
| Cow position: | |
| Alignm length: | 499 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 196-660 |
| Cow position: | |
| Alignm length: | 484 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 22 |
| Conread position: | 201-659 |
| Cow position: | |
| Alignm length: | 461 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 145 |
| Conread position: | 201-663 |
| Cow position: | |
| Alignm length: | 471 |
| Alignm identity: | 313 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 102, 113 |
| Conread position: | 204-570 |
| Cow position: | |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 100, 7 |
| Conread position: | 204-663 |
| Cow position: | |
| Alignm length: | 464 |
| Alignm identity: | 311 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 102, 24 |
| Conread position: | 205-668 |
| Cow position: | |
| Alignm length: | 471 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 33 |
| Conread position: | 206-663 |
| Cow position: | |
| Alignm length: | 461 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 100 |
| Conread position: | 206-670 |
| Cow position: | |
| Alignm length: | 473 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 200 |
| Conread position: | 207-457 |
| Cow position: | |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 133 |
| Conread position: | 207-653 |
| Cow position: | |
| Alignm length: | 464 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 111 |
| Conread position: | 207-663 |
| Cow position: | |
| Alignm length: | 461 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 208-681 |
| Cow position: | |
| Alignm length: | 478 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 97 |
| Conread position: | 210-670 |
| Cow position: | |
| Alignm length: | 488 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 139 |
| Conread position: | 211-492 |
| Cow position: | |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 211-653 |
| Cow position: | |
| Alignm length: | 457 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 208 |
| Conread position: | 211-662 |
| Cow position: | |
| Alignm length: | 455 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 104 |
| Conread position: | 211-663 |
| Cow position: | |
| Alignm length: | 456 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 109 |
| Conread position: | 211-668 |
| Cow position: | |
| Alignm length: | 470 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 137 |
| Conread position: | 211-688 |
| Cow position: | |
| Alignm length: | 497 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 27 |
| Conread position: | 212-468 |
| Cow position: | |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 212-470 |
| Cow position: | |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 96, 123 |
| Conread position: | 212-672 |
| Cow position: | |
| Alignm length: | 462 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 115 |
| Conread position: | 213-546 |
| Cow position: | |
| Alignm length: | 352 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 133 |
| Conread position: | 213-653 |
| Cow position: | |
| Alignm length: | 454 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 133 |
| Conread position: | 214-615 |
| Cow position: | |
| Alignm length: | 425 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 212 |
| Conread position: | 214-672 |
| Cow position: | |
| Alignm length: | 467 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 140 |
| Conread position: | 215-615 |
| Cow position: | |
| Alignm length: | 403 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 62 |
| Conread position: | 233-663 |
| Cow position: | |
| Alignm length: | 434 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 106 |
| Conread position: | 245-613 |
| Cow position: | |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 246-516 |
| Cow position: | |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 94 |
| Conread position: | 261-663 |
| Cow position: | |
| Alignm length: | 407 |
| Alignm identity: | 278 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 45, 61 |
| Conread position: | 268-658 |
| Cow position: | |
| Alignm length: | 395 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 113 |
| Conread position: | 287-658 |
| Cow position: | |
| Alignm length: | 378 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 39 |
| Conread position: | 356-668 |
| Cow position: | |
| Alignm length: | 313 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 362-611 |
| Cow position: | |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 102, 44 |
| Conread position: | 395-570 |
| Cow position: | |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 100, 116 |
| Conread position: | 402-571 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 97, 107 |
| Conread position: | 407-659 |
| Cow position: | |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 133, 17 |
| Conread position: | 418-671 |
| Cow position: | |
| Alignm length: | 258 |
| Alignm identity: | 194 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 79, 20 |
| Conread position: | 423-674 |
| Cow position: | |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 440-644 |
| Cow position: | |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 179, 42 |
| Conread position: | 440-672 |
| Cow position: | |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 443-683 |
| Cow position: | |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 110, 41 |
| Conread position: | 451-662 |
| Cow position: | |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 199, 31 |
| Conread position: | 467-663 |
| Cow position: | |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 117, 45 |
| Conread position: | 473-627 |
| Cow position: | |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 515-672 |
| Cow position: | |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 0 |
Show alignments to all cow chromosomes.