Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 194-663 |
| Cow position: | chr19:45590670-45590219 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 5 |
| Conread position: | 198-304 |
| Cow position: | chr19:12790080-12789973 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 203-467 |
| Cow position: | chr19:7540891-7540649 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 127, 62 |
| Conread position: | 204-608 |
| Cow position: | chr19:43240097-43240482 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 204-660 |
| Cow position: | chr19:54415308-54414863 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 204-663 |
| Cow position: | chr19:51938876-51938434 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 62 |
| Conread position: | 205-542 |
| Cow position: | chr19:26010044-26009717 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 206-663 |
| Cow position: | chr19:20417973-20417541 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 207-477 |
| Cow position: | chr19:49072021-49071759 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 133 |
| Conread position: | 207-650 |
| Cow position: | chr19:36293826-36293414 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 297 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 99, 132 |
| Conread position: | 211-318 |
| Cow position: | chr19:8772285-8772177 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 211-481 |
| Cow position: | chr19:18076021-18076276 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 96, 128 |
| Conread position: | 211-593 |
| Cow position: | chr19:55123865-55123474 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 117 |
| Conread position: | 211-615 |
| Cow position: | chr19:56007723-56007319 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 109, 33 |
| Conread position: | 211-643 |
| Cow position: | chr19:26017828-26017422 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 211-660 |
| Cow position: | chr19:34245151-34244693 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 313 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 97, 130 |
| Conread position: | 211-671 |
| Cow position: | chr19:2074480-2074955 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 212-518 |
| Cow position: | chr19:29957656-29957956 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 94, 129 |
| Conread position: | 212-672 |
| Cow position: | chr19:7581841-7581397 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 117 |
| Conread position: | 213-663 |
| Cow position: | chr19:10367412-10366967 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 133 |
| Conread position: | 213-667 |
| Cow position: | chr19:19767196-19766727 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 40 |
| Conread position: | 215-668 |
| Cow position: | chr19:13249681-13249221 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 320 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 42, 140 |
| Conread position: | 228-658 |
| Cow position: | chr19:19764641-19764209 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 110 |
| Conread position: | 230-497 |
| Cow position: | chr19:53837737-53838023 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 121 |
| Conread position: | 230-661 |
| Cow position: | chr19:9080649-9080244 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 294 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 99, 67 |
| Conread position: | 241-660 |
| Cow position: | chr19:11433639-11434064 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 126 |
| Conread position: | 255-668 |
| Cow position: | chr19:18629246-18628849 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 92 |
| Conread position: | 266-648 |
| Cow position: | chr19:24226052-24225675 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 65, 80 |
| Conread position: | 272-687 |
| Cow position: | chr19:22166146-22165746 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 37 |
| Conread position: | 356-660 |
| Cow position: | chr19:51980271-51979980 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 402-659 |
| Cow position: | chr19:8770873-8770622 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 409-659 |
| Cow position: | chr19:12124632-12124876 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 424-671 |
| Cow position: | chr19:13222933-13223172 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 226, 83 |
| Conread position: | 424-672 |
| Cow position: | chr19:27833242-27833487 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 36 |
| Conread position: | 424-672 |
| Cow position: | chr19:47320978-47321211 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 465-663 |
| Cow position: | chr19:6489252-6489056 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 19 |
Show alignments to all cow chromosomes.