Cow genome map

Conread name: Ss1.1-Thy1-THY010030C01.5

Conread position: 186-613
Cow position: chr2:44547129-44546721 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 44

Conread position: 195-663
Cow position: chr2:33630456-33630906 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 145

Conread position: 196-361
Cow position: chr2:47921645-47921481 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 22, 142

Conread position: 197-615
Cow position: chr2:44979605-44979999 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 291
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 46, 14

Conread position: 198-451
Cow position: chr2:47384306-47384060 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 108, 13

Conread position: 199-478
Cow position: chr2:82294057-82294342 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 203
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 19, 141

Conread position: 199-679
Cow position: chr2:44683989-44683529 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 149

Conread position: 200-569
Cow position: chr2:34293196-34292835 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 63

Conread position: 201-311
Cow position: chr2:3472214-3472325 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 105, 0

Conread position: 201-614
Cow position: chr2:68427118-68426699 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 37

Conread position: 201-615
Cow position: chr2:40299460-40299860 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 10

Conread position: 204-370
Cow position: chr2:85383121-85383287 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 120, 101

Conread position: 204-472
Cow position: chr2:3626759-3627030 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 193
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 102, 144

Conread position: 204-473
Cow position: chr2:44687545-44687805 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 194
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 102, 135

Conread position: 204-490
Cow position: chr2:3472885-3473162 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 103, 7

Conread position: 204-660
Cow position: chr2:35971285-35971757 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 32

Conread position: 204-663
Cow position: chr2:12767901-12768340 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 40

Conread position: 204-663
Cow position: chr2:20910568-20910119 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 134

Conread position: 204-668
Cow position: chr2:36417479-36417012 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 14

Conread position: 204-670
Cow position: chr2:35984370-35984838 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 7

Conread position: 204-672
Cow position: chr2:40853520-40853063 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 55

Conread position: 204-678
Cow position: chr2:82301217-82301672 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 116

Conread position: 204-683
Cow position: chr2:35453588-35453109 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 34

Conread position: 204-691
Cow position: chr2:86326770-86327267 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 38

Conread position: 205-508
Cow position: chr2:83889768-83889469 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 13, 144

Conread position: 206-523
Cow position: chr2:20909043-20909349 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 223
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 12, 73

Conread position: 206-663
Cow position: chr2:68157408-68157834 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 129

Conread position: 206-668
Cow position: chr2:41778818-41779286 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 126

Conread position: 207-340
Cow position: chr2:70468123-70467989 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 99, 110

Conread position: 207-663
Cow position: chr2:1479524-1479959 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 29

Conread position: 207-663
Cow position: chr2:12693445-12693008 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 113

Conread position: 207-668
Cow position: chr2:81186154-81185690 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 124

Conread position: 208-478
Cow position: chr2:86430762-86430506 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 198
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 36, 122

Conread position: 208-668
Cow position: chr2:85010146-85009681 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 36

Conread position: 209-670
Cow position: chr2:36855500-36855055 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 81

Conread position: 209-672
Cow position: chr2:66671332-66670860 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 118

Conread position: 211-312
Cow position: chr2:65720594-65720696 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 95, 0

Conread position: 211-470
Cow position: chr2:37080083-37079813 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 96, 110

Conread position: 211-479
Cow position: chr2:39878370-39878101 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 192
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 166, 44

Conread position: 211-518
Cow position: chr2:46204715-46205027 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 222
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 97, 198

Conread position: 211-522
Cow position: chr2:33512616-33512303 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 210
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 50, 114

Conread position: 211-567
Cow position: chr2:28918577-28918920 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 246
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 95, 42

Conread position: 211-615
Cow position: chr2:9946588-9946992 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 124

Conread position: 211-660
Cow position: chr2:15263401-15263846 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 80

Conread position: 211-663
Cow position: chr2:43334593-43335030 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 99

Conread position: 211-663
Cow position: chr2:82293507-82293937 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 128

Conread position: 211-666
Cow position: chr2:12565477-12565906 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 97

Conread position: 211-668
Cow position: chr2:24509080-24508636 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 14

Conread position: 211-668
Cow position: chr2:39255473-39255033 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 25

Conread position: 211-668
Cow position: chr2:69133625-69134060 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 10

Conread position: 211-670
Cow position: chr2:29192065-29191607 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 21

Conread position: 211-672
Cow position: chr2:21336700-21336269 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 60

Conread position: 211-672
Cow position: chr2:32892753-32893200 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 122

Conread position: 211-672
Cow position: chr2:45927498-45927967 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 268

Conread position: 211-672
Cow position: chr2:46564838-46565286 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 136

Conread position: 211-672
Cow position: chr2:49908997-49909430 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 41

Conread position: 212-663
Cow position: chr2:69130926-69131399 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 8

Conread position: 212-672
Cow position: chr2:47149739-47150183 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 85

Conread position: 214-555
Cow position: chr2:50965313-50964997 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 248
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 94, 18

Conread position: 214-667
Cow position: chr2:25376026-25375586 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 118

Conread position: 215-488
Cow position: chr2:45933925-45934192 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 202
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 40, 113

Conread position: 215-594
Cow position: chr2:23043260-23043626 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 131

Conread position: 216-602
Cow position: chr2:80804742-80805120 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 9

Conread position: 240-670
Cow position: chr2:44972823-44972416 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 99

Conread position: 243-648
Cow position: chr2:40020964-40021344 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 245-539
Cow position: chr2:17347545-17347255 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 199
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 50

Conread position: 245-546
Cow position: chr2:74811457-74811160 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 205
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 87

Conread position: 247-668
Cow position: chr2:64308512-64308088 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 293
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 59, 10

Conread position: 278-661
Cow position: chr2:7316956-7316592 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 259
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 28, 68

Conread position: 292-540
Cow position: chr2:21724792-21725036 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 19, 38

Conread position: 301-672
Cow position: chr2:37366271-37365909 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 8

Conread position: 391-672
Cow position: chr2:85383337-85383599 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 209
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 91, 0

Conread position: 395-661
Cow position: chr2:47554276-47554023 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 182
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 212, 26

Conread position: 396-672
Cow position: chr2:46566828-46566554 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 205

Conread position: 402-660
Cow position: chr2:29418663-29418416 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 80, 0

Conread position: 402-670
Cow position: chr2:35978647-35978895 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 191
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 36, 0

Conread position: 409-663
Cow position: chr2:3472373-3472615 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 71, 0

Conread position: 409-663
Cow position: chr2:64657930-64658172 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 231, 71

Conread position: 409-668
Cow position: chr2:46567017-46567270 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 195
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 53, 40

Conread position: 413-662
Cow position: chr2:19741264-19741027 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 67, 0

Conread position: 413-663
Cow position: chr2:68349983-68349745 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 178, 67

Conread position: 413-671
Cow position: chr2:28916147-28915903 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 67, 0

Conread position: 421-648
Cow position: chr2:58461269-58461495 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 177, 85

Conread position: 424-670
Cow position: chr2:41586119-41586358 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 15

Conread position: 424-671
Cow position: chr2:7293367-7293123 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 424-671
Cow position: chr2:46772751-46772507 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 424-672
Cow position: chr2:16800024-16800269 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 446-613
Cow position: chr2:70467926-70467770 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 460-670
Cow position: chr2:65721171-65721375 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 157
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 22, 0

Conread position: 464-672
Cow position: chr2:39871617-39871414 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 467-615
Cow position: chr2:60318696-60318839 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 122
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 17, 0

Conread position: 467-657
Cow position: chr2:86430415-86430233 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 52, 0

Conread position: 476-607
Cow position: chr2:52694328-52694200 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 115, 22

Conread position: 480-671
Cow position: chr2:45934474-45934656 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 157
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 37, 32

Conread position: 503-670
Cow position: chr2:83145082-83145245 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 12, 0

Conread position: 529-668
Cow position: chr2:3627046-3627185 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 543-675
Cow position: chr2:41388019-41387890 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 80, 0

Show alignments to all cow chromosomes.