Cow genome map
| Conread name: | Ss1.1-Thy1-THY010030C01.5 |
| Conread position: | 169-615 |
| Cow position: | |
| Alignm length: | 452 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 131 |
| Conread position: | 187-670 |
| Cow position: | |
| Alignm length: | 486 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 140 |
| Conread position: | 194-670 |
| Cow position: | |
| Alignm length: | 482 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 202-663 |
| Cow position: | |
| Alignm length: | 465 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 104, 9 |
| Conread position: | 204-370 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 8, 119 |
| Conread position: | 204-478 |
| Cow position: | |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 102 |
| Conread position: | 204-550 |
| Cow position: | |
| Alignm length: | 356 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 52, 131 |
| Conread position: | 204-611 |
| Cow position: | |
| Alignm length: | 412 |
| Alignm identity: | 285 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 11, 57 |
| Conread position: | 204-614 |
| Cow position: | |
| Alignm length: | 435 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 81 |
| Conread position: | 204-660 |
| Cow position: | |
| Alignm length: | 459 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 14 |
| Conread position: | 204-660 |
| Cow position: | |
| Alignm length: | 466 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 204-663 |
| Cow position: | |
| Alignm length: | 465 |
| Alignm identity: | 314 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 204-666 |
| Cow position: | |
| Alignm length: | 480 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 14 |
| Conread position: | 204-670 |
| Cow position: | |
| Alignm length: | 487 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 188 |
| Conread position: | 204-672 |
| Cow position: | |
| Alignm length: | 476 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 121 |
| Conread position: | 205-361 |
| Cow position: | |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 49 |
| Conread position: | 206-660 |
| Cow position: | |
| Alignm length: | 459 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 99 |
| Conread position: | 207-361 |
| Cow position: | |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 99, 122 |
| Conread position: | 207-460 |
| Cow position: | |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 121 |
| Conread position: | 207-469 |
| Cow position: | |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 11, 176 |
| Conread position: | 208-352 |
| Cow position: | |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 13, 131 |
| Conread position: | 209-666 |
| Cow position: | |
| Alignm length: | 472 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 167 |
| Conread position: | 211-570 |
| Cow position: | |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 95, 133 |
| Conread position: | 211-657 |
| Cow position: | |
| Alignm length: | 449 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 65 |
| Conread position: | 211-660 |
| Cow position: | |
| Alignm length: | 451 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 22 |
| Conread position: | 211-663 |
| Cow position: | |
| Alignm length: | 460 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 109 |
| Conread position: | 211-668 |
| Cow position: | |
| Alignm length: | 480 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 87 |
| Conread position: | 211-672 |
| Cow position: | |
| Alignm length: | 463 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 128 |
| Conread position: | 211-681 |
| Cow position: | |
| Alignm length: | 488 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 136 |
| Conread position: | 212-364 |
| Cow position: | |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 212-372 |
| Cow position: | |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 94, 53 |
| Conread position: | 212-615 |
| Cow position: | |
| Alignm length: | 408 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 94, 53 |
| Conread position: | 213-657 |
| Cow position: | |
| Alignm length: | 447 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 26 |
| Conread position: | 213-664 |
| Cow position: | |
| Alignm length: | 465 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 115 |
| Conread position: | 233-681 |
| Cow position: | |
| Alignm length: | 455 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 111 |
| Conread position: | 258-663 |
| Cow position: | |
| Alignm length: | 428 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 126 |
| Conread position: | 261-672 |
| Cow position: | |
| Alignm length: | 413 |
| Alignm identity: | 282 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 47, 66 |
| Conread position: | 262-643 |
| Cow position: | |
| Alignm length: | 384 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 87 |
| Conread position: | 263-714 |
| Cow position: | |
| Alignm length: | 460 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 65 |
| Conread position: | 271-569 |
| Cow position: | |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 59 |
| Conread position: | 273-673 |
| Cow position: | |
| Alignm length: | 408 |
| Alignm identity: | 281 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 356-660 |
| Cow position: | |
| Alignm length: | 312 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 22, 46 |
| Conread position: | 362-644 |
| Cow position: | |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 364-600 |
| Cow position: | |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 370-659 |
| Cow position: | |
| Alignm length: | 291 |
| Alignm identity: | 209 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 220, 28 |
| Conread position: | 402-554 |
| Cow position: | |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 402-634 |
| Cow position: | |
| Alignm length: | 233 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 402-668 |
| Cow position: | |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 238, 52 |
| Conread position: | 407-672 |
| Cow position: | |
| Alignm length: | 271 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 41 |
| Conread position: | 409-670 |
| Cow position: | |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 190, 71 |
| Conread position: | 418-660 |
| Cow position: | |
| Alignm length: | 246 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 79, 16 |
| Conread position: | 428-672 |
| Cow position: | |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 458-698 |
| Cow position: | |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 61, 18 |
| Conread position: | 481-660 |
| Cow position: | |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.