Cow genome map

Conread name: Ss1.1-Thy1-THY010030C01.5

Conread position: 169-615
Cow position: chr20:1512025-1511603 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 131

Conread position: 187-670
Cow position: chr20:23921294-23921754 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 140

Conread position: 194-670
Cow position: chr20:22412530-22412983 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 30

Conread position: 202-663
Cow position: chr20:28137943-28137511 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 313
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 104, 9

Conread position: 204-370
Cow position: chr20:35181290-35181462 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 139
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 8, 119

Conread position: 204-478
Cow position: chr20:28820046-28820311 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 191
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 14, 102

Conread position: 204-550
Cow position: chr20:11065930-11065583 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 240
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 52, 131

Conread position: 204-611
Cow position: chr20:3076823-3077205 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 285
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 11, 57

Conread position: 204-614
Cow position: chr20:13080337-13079913 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 81

Conread position: 204-660
Cow position: chr20:649615-649174 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 14

Conread position: 204-660
Cow position: chr20:24340557-24340099 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 33

Conread position: 204-663
Cow position: chr20:31439757-31440191 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 314
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 102, 39

Conread position: 204-666
Cow position: chr20:41157107-41157577 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 14

Conread position: 204-670
Cow position: chr20:33773459-33772984 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 188

Conread position: 204-672
Cow position: chr20:13083079-13083536 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 121

Conread position: 205-361
Cow position: chr20:2210502-2210656 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 49

Conread position: 206-660
Cow position: chr20:3532187-3531752 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 99

Conread position: 207-361
Cow position: chr20:8298280-8298128 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 99, 122

Conread position: 207-460
Cow position: chr20:32949428-32949181 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 121

Conread position: 207-469
Cow position: chr20:42801056-42800795 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 181
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 11, 176

Conread position: 208-352
Cow position: chr20:23999356-23999209 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 13, 131

Conread position: 209-666
Cow position: chr20:2226833-2227297 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 167

Conread position: 211-570
Cow position: chr20:40527005-40527354 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 247
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 95, 133

Conread position: 211-657
Cow position: chr20:10508559-10508135 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 65

Conread position: 211-660
Cow position: chr20:36325697-36326131 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 22

Conread position: 211-663
Cow position: chr20:17673783-17674214 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 109

Conread position: 211-668
Cow position: chr20:8964488-8964960 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 87

Conread position: 211-672
Cow position: chr20:35434365-35434800 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 128

Conread position: 211-681
Cow position: chr20:37058935-37059417 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 136

Conread position: 212-364
Cow position: chr20:38032677-38032529 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 34, 13

Conread position: 212-372
Cow position: chr20:31430445-31430604 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 94, 53

Conread position: 212-615
Cow position: chr20:33711278-33711653 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 269
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 94, 53

Conread position: 213-657
Cow position: chr20:36663923-36663507 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 26

Conread position: 213-664
Cow position: chr20:19030963-19030510 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 115

Conread position: 233-681
Cow position: chr20:37910706-37911145 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 111

Conread position: 258-663
Cow position: chr20:35639321-35639734 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 276
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 126

Conread position: 261-672
Cow position: chr20:22682298-22681911 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 282
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 47, 66

Conread position: 262-643
Cow position: chr20:33667843-33667480 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 87

Conread position: 263-714
Cow position: chr20:13282473-13282020 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 65

Conread position: 271-569
Cow position: chr20:35962345-35962053 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 59

Conread position: 273-673
Cow position: chr20:38726636-38726259 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 281
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 35, 25

Conread position: 356-660
Cow position: chr20:33098108-33098411 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 213
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 22, 46

Conread position: 362-644
Cow position: chr20:25039176-25038899 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 18, 37

Conread position: 364-600
Cow position: chr20:40203943-40204172 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 34, 0

Conread position: 370-659
Cow position: chr20:8298096-8297812 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 209
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 220, 28

Conread position: 402-554
Cow position: chr20:31431118-31431264 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 78, 0

Conread position: 402-634
Cow position: chr20:35181522-35181741 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 174
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 22, 0

Conread position: 402-668
Cow position: chr20:35251508-35251765 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 191
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 238, 52

Conread position: 407-672
Cow position: chr20:19490693-19490433 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 41

Conread position: 409-670
Cow position: chr20:13124838-13124574 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 197
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 190, 71

Conread position: 418-660
Cow position: chr20:14592006-14592247 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 79, 16

Conread position: 428-672
Cow position: chr20:22630688-22630913 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 185
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 72, 0

Conread position: 458-698
Cow position: chr20:32948876-32948628 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 61, 18

Conread position: 481-660
Cow position: chr20:38032124-38031948 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 31, 0

Show alignments to all cow chromosomes.