Cow genome map
Conread name: | Ss1.1-Thy1-THY010030C01.5 |
Conread position: | 186-660 |
Cow position: | chr21:28768653-28768175 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 145, 102 |
Conread position: | 197-663 |
Cow position: | chr21:32404952-32404499 (view UCSC Genome Browser custom track) |
Alignm length: | 474 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 147 |
Conread position: | 199-683 |
Cow position: | chr21:19092270-19092735 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 149 |
Conread position: | 200-466 |
Cow position: | chr21:10171121-10170845 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 204 |
Alignm E-value: | 6e-33 |
Alignm gaps (pig, cow): | 106, 18 |
Conread position: | 200-659 |
Cow position: | chr21:21407414-21407883 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 12 |
Conread position: | 202-496 |
Cow position: | chr21:10237877-10237577 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 207 |
Alignm E-value: | 6e-32 |
Alignm gaps (pig, cow): | 102, 144 |
Conread position: | 204-661 |
Cow position: | chr21:14787122-14787553 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 7 |
Conread position: | 205-361 |
Cow position: | chr21:10555906-10556063 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 118 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 10, 135 |
Conread position: | 206-660 |
Cow position: | chr21:2802384-2802844 (view UCSC Genome Browser custom track) |
Alignm length: | 474 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 101 |
Conread position: | 206-660 |
Cow position: | chr21:42227645-42228077 (view UCSC Genome Browser custom track) |
Alignm length: | 458 |
Alignm identity: | 303 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 113, 14 |
Conread position: | 206-663 |
Cow position: | chr21:24935965-24935527 (view UCSC Genome Browser custom track) |
Alignm length: | 461 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 143 |
Conread position: | 206-671 |
Cow position: | chr21:3967073-3966635 (view UCSC Genome Browser custom track) |
Alignm length: | 469 |
Alignm identity: | 313 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 12, 115 |
Conread position: | 209-353 |
Cow position: | chr21:10275987-10275842 (view UCSC Genome Browser custom track) |
Alignm length: | 148 |
Alignm identity: | 115 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 10, 132 |
Conread position: | 211-361 |
Cow position: | chr21:1500655-1500507 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 119 |
Alignm E-value: | 4e-28 |
Alignm gaps (pig, cow): | 95, 66 |
Conread position: | 211-361 |
Cow position: | chr21:42180527-42180380 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 113 |
Alignm E-value: | 7e-24 |
Alignm gaps (pig, cow): | 105, 0 |
Conread position: | 211-464 |
Cow position: | chr21:41526990-41526746 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 186 |
Alignm E-value: | 7e-34 |
Alignm gaps (pig, cow): | 95, 15 |
Conread position: | 211-492 |
Cow position: | chr21:36209688-36209962 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 206 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 95, 128 |
Conread position: | 211-542 |
Cow position: | chr21:12208302-12208641 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 128 |
Conread position: | 211-598 |
Cow position: | chr21:23236440-23236816 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 48 |
Conread position: | 211-611 |
Cow position: | chr21:22520252-22520639 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 277 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 35, 137 |
Conread position: | 211-661 |
Cow position: | chr21:6729553-6729119 (view UCSC Genome Browser custom track) |
Alignm length: | 460 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 28 |
Conread position: | 211-663 |
Cow position: | chr21:19866573-19867005 (view UCSC Genome Browser custom track) |
Alignm length: | 456 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 26 |
Conread position: | 211-663 |
Cow position: | chr21:28391978-28391546 (view UCSC Genome Browser custom track) |
Alignm length: | 457 |
Alignm identity: | 308 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 95, 42 |
Conread position: | 211-668 |
Cow position: | chr21:20015766-20016244 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 352 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 209 |
Conread position: | 212-653 |
Cow position: | chr21:47356262-47356713 (view UCSC Genome Browser custom track) |
Alignm length: | 458 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 116 |
Conread position: | 212-661 |
Cow position: | chr21:42853371-42853807 (view UCSC Genome Browser custom track) |
Alignm length: | 453 |
Alignm identity: | 311 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 114 |
Conread position: | 213-364 |
Cow position: | chr21:8375040-8375190 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 124 |
Alignm E-value: | 5e-31 |
Alignm gaps (pig, cow): | 93, 114 |
Conread position: | 213-615 |
Cow position: | chr21:18485510-18485916 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 103 |
Conread position: | 213-670 |
Cow position: | chr21:13861310-13860869 (view UCSC Genome Browser custom track) |
Alignm length: | 459 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 25 |
Conread position: | 215-681 |
Cow position: | chr21:18571585-18572043 (view UCSC Genome Browser custom track) |
Alignm length: | 473 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 129 |
Conread position: | 225-646 |
Cow position: | chr21:7402448-7402856 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 110 |
Conread position: | 228-525 |
Cow position: | chr21:40724742-40725036 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 206 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 70, 46 |
Conread position: | 238-615 |
Cow position: | chr21:35323058-35322664 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 178 |
Conread position: | 241-486 |
Cow position: | chr21:14016302-14016064 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 176 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 5, 80 |
Conread position: | 241-491 |
Cow position: | chr21:14024583-14024341 (view UCSC Genome Browser custom track) |
Alignm length: | 254 |
Alignm identity: | 180 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 5, 80 |
Conread position: | 259-570 |
Cow position: | chr21:36666891-36667196 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 216 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 44, 66 |
Conread position: | 275-670 |
Cow position: | chr21:17787947-17788347 (view UCSC Genome Browser custom track) |
Alignm length: | 409 |
Alignm identity: | 277 |
Alignm E-value: | 7.00649e-45 |
Alignm gaps (pig, cow): | 33, 77 |
Conread position: | 335-661 |
Cow position: | chr21:40644618-40644926 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 216 |
Alignm E-value: | 9e-26 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 338-669 |
Cow position: | chr21:18171671-18171991 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 0 |
Conread position: | 362-615 |
Cow position: | chr21:41070686-41070439 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 186 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 181, 118 |
Conread position: | 382-657 |
Cow position: | chr21:8375507-8375770 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 206 |
Alignm E-value: | 7.00649e-45 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 402-668 |
Cow position: | chr21:42179868-42179604 (view UCSC Genome Browser custom track) |
Alignm length: | 267 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 0 |
Conread position: | 403-636 |
Cow position: | chr21:15048154-15047923 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 170 |
Alignm E-value: | 4e-39 |
Alignm gaps (pig, cow): | 139, 0 |
Conread position: | 409-660 |
Cow position: | chr21:10556311-10556560 (view UCSC Genome Browser custom track) |
Alignm length: | 252 |
Alignm identity: | 189 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 0 |
Conread position: | 409-663 |
Cow position: | chr21:36212069-36212310 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 190 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 138, 71 |
Conread position: | 418-670 |
Cow position: | chr21:41566139-41565889 (view UCSC Genome Browser custom track) |
Alignm length: | 256 |
Alignm identity: | 195 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 79, 15 |
Conread position: | 418-671 |
Cow position: | chr21:4054464-4054732 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 197 |
Alignm E-value: | 6e-32 |
Alignm gaps (pig, cow): | 81, 16 |
Conread position: | 424-671 |
Cow position: | chr21:3475462-3475223 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 197 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 0 |
Conread position: | 424-671 |
Cow position: | chr21:47962720-47962478 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 0 |
Conread position: | 456-670 |
Cow position: | chr21:10170575-10170370 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 153 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 485-668 |
Cow position: | chr21:19521614-19521796 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 133 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 8, 23 |
Conread position: | 515-670 |
Cow position: | chr21:36210043-36210198 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 116 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 120, 95 |
Show alignments to all cow chromosomes.