Cow genome map

Conread name: Ss1.1-Thy1-THY010030C01.5

Conread position: 186-660
Cow position: chr21:28768653-28768175 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 102

Conread position: 197-663
Cow position: chr21:32404952-32404499 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 147

Conread position: 199-683
Cow position: chr21:19092270-19092735 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 149

Conread position: 200-466
Cow position: chr21:10171121-10170845 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 204
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 106, 18

Conread position: 200-659
Cow position: chr21:21407414-21407883 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 12

Conread position: 202-496
Cow position: chr21:10237877-10237577 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 207
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 102, 144

Conread position: 204-661
Cow position: chr21:14787122-14787553 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 7

Conread position: 205-361
Cow position: chr21:10555906-10556063 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 135

Conread position: 206-660
Cow position: chr21:2802384-2802844 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 101

Conread position: 206-660
Cow position: chr21:42227645-42228077 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 303
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 113, 14

Conread position: 206-663
Cow position: chr21:24935965-24935527 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 143

Conread position: 206-671
Cow position: chr21:3967073-3966635 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 313
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 12, 115

Conread position: 209-353
Cow position: chr21:10275987-10275842 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 10, 132

Conread position: 211-361
Cow position: chr21:1500655-1500507 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 95, 66

Conread position: 211-361
Cow position: chr21:42180527-42180380 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 105, 0

Conread position: 211-464
Cow position: chr21:41526990-41526746 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 186
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 95, 15

Conread position: 211-492
Cow position: chr21:36209688-36209962 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 206
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 95, 128

Conread position: 211-542
Cow position: chr21:12208302-12208641 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 128

Conread position: 211-598
Cow position: chr21:23236440-23236816 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 48

Conread position: 211-611
Cow position: chr21:22520252-22520639 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 277
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 35, 137

Conread position: 211-661
Cow position: chr21:6729553-6729119 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 28

Conread position: 211-663
Cow position: chr21:19866573-19867005 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 26

Conread position: 211-663
Cow position: chr21:28391978-28391546 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 308
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 95, 42

Conread position: 211-668
Cow position: chr21:20015766-20016244 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 209

Conread position: 212-653
Cow position: chr21:47356262-47356713 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 116

Conread position: 212-661
Cow position: chr21:42853371-42853807 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 114

Conread position: 213-364
Cow position: chr21:8375040-8375190 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 124
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 93, 114

Conread position: 213-615
Cow position: chr21:18485510-18485916 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 103

Conread position: 213-670
Cow position: chr21:13861310-13860869 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 25

Conread position: 215-681
Cow position: chr21:18571585-18572043 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 129

Conread position: 225-646
Cow position: chr21:7402448-7402856 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 110

Conread position: 228-525
Cow position: chr21:40724742-40725036 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 206
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 70, 46

Conread position: 238-615
Cow position: chr21:35323058-35322664 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 178

Conread position: 241-486
Cow position: chr21:14016302-14016064 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 176
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 5, 80

Conread position: 241-491
Cow position: chr21:14024583-14024341 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 5, 80

Conread position: 259-570
Cow position: chr21:36666891-36667196 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 216
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 44, 66

Conread position: 275-670
Cow position: chr21:17787947-17788347 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 277
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 33, 77

Conread position: 335-661
Cow position: chr21:40644618-40644926 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 216
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 338-669
Cow position: chr21:18171671-18171991 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 362-615
Cow position: chr21:41070686-41070439 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 186
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 181, 118

Conread position: 382-657
Cow position: chr21:8375507-8375770 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 206
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 31, 0

Conread position: 402-668
Cow position: chr21:42179868-42179604 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 403-636
Cow position: chr21:15048154-15047923 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 170
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 139, 0

Conread position: 409-660
Cow position: chr21:10556311-10556560 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 409-663
Cow position: chr21:36212069-36212310 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 190
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 138, 71

Conread position: 418-670
Cow position: chr21:41566139-41565889 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 15

Conread position: 418-671
Cow position: chr21:4054464-4054732 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 81, 16

Conread position: 424-671
Cow position: chr21:3475462-3475223 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 424-671
Cow position: chr21:47962720-47962478 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 456-670
Cow position: chr21:10170575-10170370 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 26, 0

Conread position: 485-668
Cow position: chr21:19521614-19521796 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 8, 23

Conread position: 515-670
Cow position: chr21:36210043-36210198 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 120, 95

Show alignments to all cow chromosomes.